Detailed information NTG0117213

Bioinformatically predicted

Overview

• Name: proC
• Type: Machinery gene
• Locus tag: YSQ_RS03550
• Genome accession: NZ_CP007183
• Coordinates: 712734..713471 (-)
• Length: 245 a.a.
• NCBI ID: WP_002839216.1
• Uniprot ID: -
• Organism: Campylobacter coli RM1875
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 707734..718471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YSQ_RS03510 (YSQ_03565)	-	707847..708608 (+)	762	WP_025443303.1	ATP-binding protein	-
YSQ_RS03515 (YSQ_03570)	-	708605..709288 (+)	684	WP_002777124.1	3-methyladenine DNA glycosylase	-
YSQ_RS03520 (YSQ_03575)	thiD	709288..710100 (+)	813	WP_002786353.1	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	-
YSQ_RS03525 (YSQ_03580)	thiE	710090..710722 (+)	633	WP_002839213.1	thiamine phosphate synthase	-
YSQ_RS03530 (YSQ_03585)	-	710700..711329 (+)	630	WP_002780243.1	uroporphyrinogen-III synthase	-
YSQ_RS03535 (YSQ_03590)	-	711322..711774 (-)	453	WP_002777117.1	hypothetical protein	-
YSQ_RS03540 (YSQ_03595)	-	711771..712439 (-)	669	WP_002790524.1	hypothetical protein	-
YSQ_RS03545 (YSQ_03600)	-	712432..712737 (-)	306	WP_002839215.1	hypothetical protein	-
YSQ_RS03550 (YSQ_03605)	proC	712734..713471 (-)	738	WP_002839216.1	pyrroline-5-carboxylate reductase	Machinery gene
YSQ_RS03555 (YSQ_03610)	fliW	713471..713860 (-)	390	WP_002777093.1	flagellar assembly protein FliW	-
YSQ_RS03560 (YSQ_03615)	-	714024..714671 (+)	648	WP_002777091.1	outer membrane protein assembly factor BamD	-
YSQ_RS03565 (YSQ_03620)	lon	714687..717062 (+)	2376	WP_002780250.1	endopeptidase La	-
YSQ_RS03570 (YSQ_03625)	rpsR	717118..717378 (-)	261	WP_002777087.1	30S ribosomal protein S18	-
YSQ_RS03575 (YSQ_03630)	-	717389..717937 (-)	549	WP_002814664.1	single-stranded DNA-binding protein	-
YSQ_RS03580 (YSQ_03635)	rpsF	717946..718323 (-)	378	WP_002812868.1	30S ribosomal protein S6	-

Sequence

Protein

• Length: 245 a.a.
• Molecular weight: 26796.25 Da
• Isoelectric Point: 9.5957

>NTDB_id=117213 YSQ_RS03550 WP_002839216.1 712734..713471(-) (proC) [Campylobacter coli RM1875]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFKAL
NASAT

Nucleotide

• Length: 738 bp

>NTDB_id=117213 YSQ_RS03550 WP_002839216.1 712734..713471(-) (proC) [Campylobacter coli RM1875]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAGGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTAAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

• Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer) (148-244)

• NADP oxidoreductase coenzyme F420-dependent (F420_oxidored) (7-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
proC	Campylobacter jejuni subsp. jejuni 81-176	80.417	97.959	0.788