Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   YSQ_RS02120 Genome accession   NZ_CP007183
Coordinates   432003..432518 (+) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli RM1875     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427003..437518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS02090 (YSQ_02115) - 427461..427799 (+) 339 WP_002838987.1 hypothetical protein -
  YSQ_RS02095 (YSQ_02120) - 427808..428533 (+) 726 WP_002838990.1 phosphatidate cytidylyltransferase -
  YSQ_RS02100 (YSQ_02125) dxr 428530..429600 (+) 1071 WP_002838992.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  YSQ_RS02105 (YSQ_02130) - 429602..430995 (+) 1394 Protein_409 M99 family carboxypeptidase catalytic domain-containing protein -
  YSQ_RS02115 (YSQ_02135) tsaD 430992..431999 (+) 1008 WP_002838995.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  YSQ_RS02120 (YSQ_02140) ctsG 432003..432518 (+) 516 WP_002838045.1 type II secretion system protein Machinery gene
  YSQ_RS02125 (YSQ_02145) - 432518..433759 (+) 1242 WP_002780551.1 DUF2920 family protein -
  YSQ_RS02130 (YSQ_02150) - 433771..435600 (+) 1830 WP_025443285.1 motility associated factor glycosyltransferase family protein -
  YSQ_RS02135 (YSQ_02155) - 435597..437417 (+) 1821 WP_025443286.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=117206 YSQ_RS02120 WP_002838045.1 432003..432518(+) (ctsG) [Campylobacter coli RM1875]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117206 YSQ_RS02120 WP_002838045.1 432003..432518(+) (ctsG) [Campylobacter coli RM1875]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment