Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   YSS_RS07110 Genome accession   NZ_CP007181
Coordinates   1367838..1368353 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter coli RM4661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362838..1373353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS07095 (YSS_07260) - 1362943..1364763 (-) 1821 WP_025399172.1 motility associated factor glycosyltransferase family protein -
  YSS_RS07100 (YSS_07265) - 1364760..1366583 (-) 1824 WP_025399173.1 motility associated factor glycosyltransferase family protein -
  YSS_RS07105 - 1366595..1367838 (-) 1244 Protein_1391 DUF2920 family protein -
  YSS_RS07110 (YSS_07280) ctsG 1367838..1368353 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  YSS_RS07115 (YSS_07285) tsaD 1368354..1369361 (-) 1008 WP_025399174.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  YSS_RS07120 (YSS_07290) - 1369358..1370752 (-) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  YSS_RS07125 (YSS_07295) dxr 1370749..1371825 (-) 1077 WP_025399175.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  YSS_RS07130 (YSS_07300) - 1371822..1372547 (-) 726 WP_025399176.1 phosphatidate cytidylyltransferase -
  YSS_RS07135 (YSS_07305) - 1372556..1372893 (-) 338 Protein_1397 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=117186 YSS_RS07110 WP_002799196.1 1367838..1368353(-) (ctsG) [Campylobacter coli RM4661]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117186 YSS_RS07110 WP_002799196.1 1367838..1368353(-) (ctsG) [Campylobacter coli RM4661]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment