Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACOFKY_RS14605 Genome accession   NZ_OZ241355
Coordinates   3164733..3165644 (-) Length   303 a.a.
NCBI ID   WP_419819682.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3159733..3170644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS14595 pilY1 3160029..3163886 (-) 3858 WP_419820735.1 pilus assembly protein PilY Machinery gene
  ACOFKY_RS14600 - 3163970..3164749 (-) 780 WP_419358987.1 pilus assembly PilX family protein -
  ACOFKY_RS14605 pilW 3164733..3165644 (-) 912 WP_419819682.1 PilW family protein Machinery gene
  ACOFKY_RS14610 pilV 3165654..3166175 (-) 522 WP_336952287.1 type IV pilus modification protein PilV Machinery gene
  ACOFKY_RS14615 - 3166172..3166681 (-) 510 WP_336952288.1 pilus assembly FimT family protein -
  ACOFKY_RS14620 ispH 3166824..3167774 (-) 951 WP_419358995.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACOFKY_RS14625 gmk 3167909..3168529 (+) 621 WP_336952290.1 guanylate kinase -
  ACOFKY_RS14630 rpoZ 3168640..3168921 (+) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32654.24 Da        Isoelectric Point: 8.3912

>NTDB_id=1170780 ACOFKY_RS14605 WP_419819682.1 3164733..3165644(-) (pilW) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MTKQEIMGPQKGFTLIELIVALAIGLIISAAALQLFTGGLITAKMQEASAELQDSGVFGVDYIARDIRLANFGNVNNPVL
DTTTPNGGIIFTSADPALGKANLQLKDVSAGLLTKSGGSTGTSSSSDQLTIMFQAPNKMMNCEGREVKASEYVIQRYFLR
TDNGNLALACDANTPGSSVPSIAGLNDSNNGEVIMPRVDLVRFYIGAKAGNNFSYYTIEQFKTAVKGASSPNIPRVVSIR
MMVLVRSKDPITNKNIDPSKESFNFPDGEVTLTDKNTKYLRRLYTTNIALRNGLGEKIYETSN

Nucleotide


Download         Length: 912 bp        

>NTDB_id=1170780 ACOFKY_RS14605 WP_419819682.1 3164733..3165644(-) (pilW) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGACGAAGCAAGAAATAATGGGACCTCAGAAGGGTTTCACACTAATTGAGTTGATCGTTGCTCTTGCCATTGGTCTTAT
TATTAGCGCTGCAGCTTTGCAATTATTCACAGGTGGTTTAATTACGGCAAAAATGCAAGAAGCAAGTGCAGAGTTACAAG
ATAGTGGTGTGTTCGGTGTTGATTATATTGCTAGAGATATTCGTCTAGCGAATTTTGGAAATGTAAATAATCCAGTGTTA
GATACAACAACACCCAATGGCGGAATTATTTTTACCAGTGCTGATCCAGCTTTAGGCAAGGCAAATCTACAGTTAAAAGA
TGTAAGTGCGGGATTGTTAACAAAATCAGGAGGTTCTACTGGGACGAGTTCGAGTAGTGATCAACTAACAATTATGTTTC
AAGCACCCAATAAAATGATGAATTGTGAAGGCAGAGAAGTAAAGGCTAGTGAGTATGTTATTCAACGTTATTTTTTAAGG
ACAGATAATGGTAACTTGGCATTGGCTTGTGATGCCAACACTCCAGGAAGTAGTGTCCCTTCTATTGCTGGATTAAATGA
TTCAAACAATGGTGAAGTGATTATGCCGAGAGTGGATCTTGTTAGATTTTACATCGGAGCAAAAGCTGGAAACAATTTTA
GCTATTACACAATTGAGCAATTTAAGACTGCAGTAAAAGGGGCGTCCTCTCCCAATATACCTAGAGTTGTCTCGATTAGA
ATGATGGTTTTGGTTCGCTCTAAAGATCCAATAACAAATAAAAATATAGACCCCTCTAAAGAAAGCTTTAATTTCCCTGA
TGGTGAAGTGACTTTAACGGATAAAAACACCAAATATTTACGACGTTTATATACAACAAATATTGCTTTAAGAAATGGCT
TAGGAGAGAAGATTTATGAAACATCGAACTAA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(157-292)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

45.401

100

0.505

Multiple sequence alignment