Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ACOFKY_RS06820 Genome accession   NZ_OZ241355
Coordinates   1447723..1448379 (-) Length   218 a.a.
NCBI ID   WP_419820477.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442723..1453379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS06790 - 1442945..1443379 (-) 435 WP_336951423.1 SRPBCC family protein -
  ACOFKY_RS06795 tadA 1443465..1443989 (-) 525 WP_336951424.1 tRNA adenosine(34) deaminase TadA -
  ACOFKY_RS06800 - 1443996..1445117 (-) 1122 WP_336951425.1 enoyl-CoA hydratase/isomerase family protein -
  ACOFKY_RS06805 ung 1445114..1445827 (-) 714 WP_419327453.1 uracil-DNA glycosylase -
  ACOFKY_RS06810 - 1445901..1446497 (-) 597 WP_336951426.1 6-carboxytetrahydropterin synthase -
  ACOFKY_RS06815 gspK 1446718..1447674 (-) 957 WP_336951427.1 type II secretion system minor pseudopilin GspK -
  ACOFKY_RS06820 xcpW 1447723..1448379 (-) 657 WP_419820477.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACOFKY_RS06825 xcpV 1448379..1448762 (-) 384 WP_336951430.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACOFKY_RS06830 - 1448749..1449315 (-) 567 WP_336951431.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACOFKY_RS06835 - 1449321..1449935 (-) 615 WP_004821232.1 TetR/AcrR family transcriptional regulator -
  ACOFKY_RS06840 - 1450025..1450798 (-) 774 WP_419327449.1 TatD family hydrolase -
  ACOFKY_RS06845 - 1450826..1451167 (-) 342 WP_336951434.1 PilZ domain-containing protein -
  ACOFKY_RS06850 - 1451194..1452174 (-) 981 WP_419820478.1 DNA polymerase III subunit delta' -
  ACOFKY_RS06855 kdsB 1452227..1452988 (-) 762 WP_336951436.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25263.97 Da        Isoelectric Point: 8.2362

>NTDB_id=1170768 ACOFKY_RS06820 WP_419820477.1 1447723..1448379(-) (xcpW) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MMNLIKHKKNQTVYSQKSTGFTLIELLVAIAIFAVLSALGWKIFDYLIKVKDRNVMHEENLGQLQGAYQQIQRDTLQIVP
ISARNGEEIEPALRLDNQKLSFSKTGVTDPLKQGLSPYERIEYFYNPQEKKLYRLKYSNLNRNNSEQPLSSVLLADVDQY
RIDALNPTELDRWPNDMIKNEGQLPRGIKIKVTIRDVEYEWIFSLLNSDYLINNSPAI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=1170768 ACOFKY_RS06820 WP_419820477.1 1447723..1448379(-) (xcpW) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGATGAATCTAATCAAGCATAAAAAAAATCAAACTGTGTATTCACAGAAAAGCACAGGCTTTACCTTAATTGAACTTTT
GGTGGCCATCGCAATCTTTGCTGTTTTGTCAGCATTGGGGTGGAAAATATTTGACTATTTGATAAAAGTTAAAGATCGCA
ATGTTATGCATGAGGAAAATTTAGGCCAATTACAAGGCGCGTATCAACAGATTCAACGTGATACTTTGCAAATTGTTCCC
ATTTCTGCAAGAAATGGTGAGGAAATTGAACCCGCTTTACGCTTAGATAACCAAAAACTATCTTTCAGTAAAACTGGTGT
AACCGATCCGCTTAAACAAGGGTTGTCACCCTATGAACGAATTGAATATTTTTACAATCCACAAGAGAAAAAACTTTACC
GTCTGAAATATTCAAATTTAAATCGAAATAATTCAGAACAACCTTTGTCGAGTGTGTTATTGGCAGATGTGGATCAGTAT
CGTATTGATGCTTTAAATCCAACTGAATTAGATCGCTGGCCAAACGATATGATTAAAAATGAAGGGCAATTACCACGTGG
GATTAAAATCAAAGTCACGATTCGTGATGTAGAATATGAATGGATTTTTAGTTTGCTCAATTCTGACTATTTGATCAATA
ACAGCCCAGCTATTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(17-39)

Type II secretion system (T2SS), protein J (T2SSJ)

(71-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

64.141

90.826

0.583

Multiple sequence alignment