Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACKWRP_RS20720 Genome accession   NZ_OZ205032
Coordinates   4019937..4020716 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus cereus biovar anthracis isolate BcbvaCA     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4014937..4025716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWRP_RS20695 uppS 4015682..4016458 (-) 777 WP_000971301.1 isoprenyl transferase -
  ACKWRP_RS20700 frr 4016544..4017101 (-) 558 WP_000531503.1 ribosome recycling factor -
  ACKWRP_RS20705 pyrH 4017104..4017826 (-) 723 WP_000042663.1 UMP kinase -
  ACKWRP_RS20710 tsf 4017893..4018780 (-) 888 WP_001018581.1 translation elongation factor Ts -
  ACKWRP_RS20715 rpsB 4018884..4019585 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  ACKWRP_RS20720 codY 4019937..4020716 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACKWRP_RS20725 hslU 4020794..4022185 (-) 1392 WP_000550086.1 ATP-dependent protease ATPase subunit HslU -
  ACKWRP_RS20730 hslV 4022208..4022750 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  ACKWRP_RS20735 xerC 4022793..4023692 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  ACKWRP_RS20740 trmFO 4023758..4025062 (-) 1305 WP_001991958.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=1169870 ACKWRP_RS20720 WP_000421288.1 4019937..4020716(-) (codY) [Bacillus cereus biovar anthracis isolate BcbvaCA]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1169870 ACKWRP_RS20720 WP_000421288.1 4019937..4020716(-) (codY) [Bacillus cereus biovar anthracis isolate BcbvaCA]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment