Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFY5N_RS03515 Genome accession   NZ_OZ186741
Coordinates   711696..713519 (+) Length   607 a.a.
NCBI ID   WP_022037775.1    Uniprot ID   -
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD024     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 706696..718519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY5N_RS03495 rd 707136..707297 (-) 162 WP_004842991.1 rubredoxin -
  ACFY5N_RS03500 - 707600..708754 (+) 1155 WP_118038875.1 DUF4317 domain-containing protein -
  ACFY5N_RS03505 - 708962..709450 (+) 489 WP_004842994.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFY5N_RS03510 - 709469..711703 (+) 2235 WP_101875114.1 ABC transporter ATP-binding protein -
  ACFY5N_RS03515 rcrQ 711696..713519 (+) 1824 WP_022037775.1 ABC transporter ATP-binding protein Regulator
  ACFY5N_RS03520 moaC 713619..714122 (+) 504 WP_022037776.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACFY5N_RS03525 - 714119..714619 (+) 501 WP_022037777.1 molybdenum cofactor biosynthesis protein B -
  ACFY5N_RS03530 moaA 714592..715572 (+) 981 WP_373120514.1 GTP 3',8-cyclase MoaA -
  ACFY5N_RS03535 - 715579..716022 (+) 444 WP_022037779.1 MOSC domain-containing protein -
  ACFY5N_RS03540 prmA 716114..717070 (+) 957 WP_022037780.1 50S ribosomal protein L11 methyltransferase -
  ACFY5N_RS03545 - 717087..717827 (+) 741 WP_101875113.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67712.13 Da        Isoelectric Point: 5.7960

>NTDB_id=1168492 ACFY5N_RS03515 WP_022037775.1 711696..713519(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD024]
MPRHGHMGPGGANEKAKDFKGTLKKLLHYMSVFKVQMAFIVIFAICGTVFDIVGPKILGKATTEIYNGLVSKVSGGSGMD
FGRIGQILLMTLGLYLISALCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDIDTLGQSLN
QSATQMITSVTTLIGVLAMMLSISPLMTLATLVILPVSMILISFVMKHSQKYFRGQQEYLGNVNGQVEEIYSGHNIIKAF
NKEEDVIREFDTTNDRLYDSAWRSQFFSGMMMPIMQFIGNLGYVVVAILGGFLAIRKTIEVGDIQSFIQYVKRFTQPIQQ
IAQVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADKIIVNDFSAEVKEGQKIAIVGPTG
AGKTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIRDNIKYGKLDATDEEVIQAAKAAHVH
QFVKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1168492 ACFY5N_RS03515 WP_022037775.1 711696..713519(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD024]
ATGCCTAGACATGGACATATGGGGCCGGGCGGCGCCAATGAGAAAGCAAAAGACTTTAAGGGAACGCTGAAAAAGCTTCT
TCATTATATGAGTGTCTTTAAAGTACAGATGGCATTTATTGTGATTTTTGCAATCTGTGGAACCGTTTTTGATATTGTAG
GACCGAAGATTTTAGGAAAGGCCACAACAGAGATTTATAATGGTCTGGTCAGTAAAGTGTCAGGCGGCAGTGGAATGGAC
TTTGGGAGAATTGGGCAGATTCTTCTGATGACATTGGGATTATATCTGATCAGCGCATTGTGTTCGTTTATCCAGGGCTA
TCTGATGACGGGAGTTTCCCAGAAAACAACATACCGTTTGCGTAAGGAGATTTCCGAGAAGATCAATCGGATGCCGATGA
ATTATTTTGATACAAAGCCGGTCGGAGAAGTACTCTCCAGAGTGACCAATGATATTGATACGCTGGGACAGAGTCTGAAC
CAGAGTGCGACACAGATGATCACGTCCGTGACAACATTGATCGGAGTACTGGCAATGATGCTTTCCATCAGCCCGTTGAT
GACATTGGCGACGCTGGTAATCCTGCCGGTCTCTATGATCCTGATTTCATTTGTGATGAAGCATTCACAGAAATATTTCC
GCGGACAGCAGGAATATCTGGGAAATGTGAATGGGCAGGTGGAAGAAATCTACAGTGGACATAATATCATCAAAGCCTTC
AATAAAGAGGAAGATGTGATTCGTGAGTTTGATACAACCAATGACAGGCTTTATGATTCCGCATGGCGTTCTCAGTTTTT
TTCCGGGATGATGATGCCGATCATGCAGTTTATCGGAAATCTCGGATATGTGGTGGTTGCGATTCTGGGAGGATTTCTGG
CGATCAGAAAGACAATTGAAGTAGGAGATATTCAGTCTTTTATTCAGTATGTGAAACGTTTTACACAGCCGATCCAGCAG
ATCGCACAGGTTGCGAACATGCTGCAGATGACGGCGGCGGCGTCCGAGAGAGTGTTTGAATTCCTGGAGGAAGAAGAGGA
AGATCAGACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACA
ATGCGGATAAGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGGCCGACCGGA
GCAGGAAAGACGACGATGATCAAGCTTCTGATGCGGTTCTACGATGTGAACAGCGGTGCCATCAAGATCGACGGACATGA
CGTCAGGGATTTCAACAGAAGTGAACTGCGTGAGATGTTCGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTA
TCCGGGACAATATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCAGGCAGCCAAGGCAGCTCATGTGCAT
CAGTTTGTGAAGACACTTCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGACAGAAACA
GCTGTTGACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTCTGTAGATACAA
GGACAGAGGTATTGATCCAGAAGGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTAATCGCTCATCGTCTGTCA
ACGATCCGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGC
AAAAGGCGGATTCTATGCGGATCTGTATAACTCACAGTTTGAGAAAACAACGGAGGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(381-529)

ABC transporter transmembrane region (ABC_membrane)

(38-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.356

97.199

0.499

Multiple sequence alignment