Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFY56_RS04030 Genome accession   NZ_OZ186728
Coordinates   840357..842180 (+) Length   607 a.a.
NCBI ID   WP_101884684.1    Uniprot ID   A0A2N5NV65
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD021     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 835357..847180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY56_RS04010 rd 835797..835958 (-) 162 WP_004842991.1 rubredoxin -
  ACFY56_RS04015 - 836261..837415 (+) 1155 WP_009245898.1 DUF4317 domain-containing protein -
  ACFY56_RS04020 - 837623..838111 (+) 489 WP_379684139.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFY56_RS04025 - 838130..840364 (+) 2235 WP_004842995.1 ABC transporter ATP-binding protein -
  ACFY56_RS04030 rcrQ 840357..842180 (+) 1824 WP_101884684.1 ABC transporter ATP-binding protein Regulator
  ACFY56_RS04035 moaC 842280..842783 (+) 504 WP_022037776.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACFY56_RS04040 - 842780..843280 (+) 501 WP_022037777.1 molybdenum cofactor biosynthesis protein B -
  ACFY56_RS04045 moaA 843253..844233 (+) 981 WP_022037778.1 GTP 3',8-cyclase MoaA -
  ACFY56_RS04050 - 844240..844683 (+) 444 WP_022037779.1 MOSC domain-containing protein -
  ACFY56_RS04055 prmA 844775..845731 (+) 957 WP_022037780.1 50S ribosomal protein L11 methyltransferase -
  ACFY56_RS04060 - 845748..846488 (+) 741 WP_156733773.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67687.19 Da        Isoelectric Point: 5.2811

>NTDB_id=1168393 ACFY56_RS04030 WP_101884684.1 840357..842180(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD021]
MPRHGHMGPQGADEKAKDLKGTLKKLLHYMSVFKVQMLLIVIFAVCGTTFTIIGPKILGKATTEIANGLMSKVSGGSGMD
FEKIGQILLLTLALYLVSTLCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDVDTLGQSLN
QSATQMIQSVTTLIGVLIMMLTISPLMTLVTLIILPISMLLIGFVMKHSQKYFRGQQEYLGNVNGQVEEVYSGHSIIKAF
NKEENVIDEFDATNDKLYDSAWKSQFFSGMMMPIMQFIGNLGYVVVAILGGFLTIKKTIEVGDIQSFIQYVRSFTQPIQQ
IAQVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADRIIVNDFSAEVKEGQKIAIVGPTG
AGKTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIWDNIKYGKLDATDEEVIQAAKAAHVH
QFVKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1168393 ACFY56_RS04030 WP_101884684.1 840357..842180(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD021]
ATGCCTAGACATGGACATATGGGTCCGCAAGGAGCGGATGAAAAAGCAAAGGATTTAAAGGGAACACTTAAGAAATTGCT
TCATTATATGAGTGTATTCAAGGTGCAGATGCTGTTGATCGTGATCTTTGCAGTCTGCGGAACAACATTTACGATTATCG
GACCAAAGATTCTTGGAAAAGCAACAACGGAAATTGCCAACGGTCTGATGAGCAAAGTATCCGGCGGAAGCGGGATGGAC
TTTGAAAAGATTGGACAGATCCTGCTGCTGACACTTGCATTATATCTGGTCAGCACATTGTGCTCGTTTATTCAGGGATA
TCTGATGACGGGGGTTTCTCAGAAAACAACATACCGTTTGCGAAAAGAAATCTCAGAGAAGATCAATCGTATGCCGATGA
ACTATTTTGATACAAAACCAGTCGGAGAAGTGTTATCCAGAGTGACCAATGATGTTGATACACTGGGACAGAGTCTGAAC
CAGAGTGCGACACAGATGATTCAATCCGTGACAACGCTGATTGGGGTGCTGATCATGATGCTTACGATCAGTCCTTTGAT
GACACTTGTGACACTGATTATTCTCCCGATTTCCATGCTGCTGATCGGATTTGTCATGAAGCATTCTCAGAAATATTTCC
GCGGACAGCAGGAGTATCTGGGAAATGTGAATGGACAGGTGGAAGAAGTTTACAGTGGTCACAGTATTATCAAGGCTTTT
AATAAAGAAGAAAATGTAATTGATGAGTTTGATGCAACCAATGACAAATTGTATGACTCTGCATGGAAATCGCAGTTCTT
TTCAGGAATGATGATGCCGATCATGCAGTTTATCGGAAATCTTGGCTATGTAGTCGTTGCGATTCTGGGAGGATTTCTGA
CGATCAAGAAAACGATTGAAGTGGGAGATATTCAGTCTTTCATTCAATATGTCAGAAGTTTTACACAGCCGATCCAGCAG
ATCGCACAGGTTGCAAACATGCTGCAGATGACAGCTGCGGCGTCCGAGAGAGTGTTTGAATTTCTGGAGGAAGAAGAGGA
AGATCAGACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACA
ATGCGGATAGGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGACCGACCGGA
GCAGGAAAGACAACGATGATCAAGCTTCTGATGCGATTCTACGATGTAAACAGCGGTGCGATCAAGATTGACGGACATGA
CGTCAGAGATTTCAACAGAAGTGAACTGCGTGAAATGTTCGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTA
TTTGGGACAACATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCAGGCAGCCAAGGCAGCTCATGTGCAT
CAGTTTGTGAAGACACTGCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGTCAGAAACA
GCTGTTGACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTCTGTAGATACAA
GGACAGAGGTATTGATCCAGAAGGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTAATCGCTCATCGTCTGTCA
ACGATCCGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGC
AAAAGGCGGATTCTATGCGGATCTGTATAACTCACAGTTTGAGAAAACAACGGAGGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5NV65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.034

97.199

0.506

Multiple sequence alignment