Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFY5T_RS12575 Genome accession   NZ_OZ186722
Coordinates   747115..748938 (+) Length   607 a.a.
NCBI ID   WP_004842996.1    Uniprot ID   A0A829NMY4
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD013     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 742115..753938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY5T_RS12555 rd 742555..742716 (-) 162 WP_004842991.1 rubredoxin -
  ACFY5T_RS12560 - 743019..744173 (+) 1155 WP_009245898.1 DUF4317 domain-containing protein -
  ACFY5T_RS12565 - 744381..744869 (+) 489 WP_004842994.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFY5T_RS12570 - 744888..747122 (+) 2235 WP_004842995.1 ABC transporter ATP-binding protein -
  ACFY5T_RS12575 rcrQ 747115..748938 (+) 1824 WP_004842996.1 ABC transporter ATP-binding protein Regulator
  ACFY5T_RS12580 moaC 749038..749541 (+) 504 WP_004842998.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACFY5T_RS12585 - 749538..750038 (+) 501 WP_004842999.1 molybdenum cofactor biosynthesis protein B -
  ACFY5T_RS12590 moaA 750011..750991 (+) 981 WP_009245897.1 GTP 3',8-cyclase MoaA -
  ACFY5T_RS12595 - 750998..751441 (+) 444 WP_024853045.1 MOSC domain-containing protein -
  ACFY5T_RS12600 prmA 751533..752489 (+) 957 WP_022037780.1 50S ribosomal protein L11 methyltransferase -
  ACFY5T_RS12605 - 752506..753246 (+) 741 WP_378954120.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67747.29 Da        Isoelectric Point: 5.2811

>NTDB_id=1168353 ACFY5T_RS12575 WP_004842996.1 747115..748938(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD013]
MPRHGHMGPQGADEKAKDLKGTLKKLLHYMSVFKVQMLLIVIFAVCGTTFTIIGPKILGKATTEIANGLMSKVSGGSGMD
FEKIGQILLLTLALYLVSTLCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDVDTLGQSLN
QSATQMIQSVTTLIGVLIMMLTISPLMTLVTLIILPISMLLIGFVMKHSQKYFRGQQEYLGNVNGQVEEVYSGHSIIKAF
NKEENVIDEFDATNDKLYDSAWKSQFFSGMMMPIMQFIGNLGYVVVAILGGFLTIKKTIEVGDIQSFIQYVRSFTQPIQQ
IAQVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADRIIVNDFSAEVKEGQKIAIVGPTG
AGKTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIWDNIKYGKLDATDEEVIQAAKAAHVH
QFVKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSFVDTRTEVLIQKAMDNLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1168353 ACFY5T_RS12575 WP_004842996.1 747115..748938(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD013]
ATGCCTAGACATGGACATATGGGTCCGCAAGGAGCGGATGAAAAAGCAAAGGATTTAAAGGGAACACTTAAGAAATTGCT
TCATTATATGAGTGTATTCAAGGTGCAGATGCTGTTGATCGTGATCTTTGCAGTCTGCGGAACAACATTTACGATTATCG
GACCAAAGATTCTTGGAAAAGCAACAACGGAAATTGCCAACGGTCTGATGAGCAAAGTATCCGGCGGAAGCGGGATGGAC
TTTGAAAAGATTGGACAGATCCTGCTGCTGACACTTGCATTATATCTGGTCAGCACATTGTGCTCGTTTATTCAGGGATA
TCTGATGACGGGGGTTTCTCAGAAAACAACATACCGTTTGCGAAAAGAAATCTCAGAGAAGATCAATCGTATGCCGATGA
ACTATTTTGATACAAAACCAGTCGGAGAAGTGTTATCCAGAGTGACCAATGATGTTGATACACTGGGACAGAGTCTGAAC
CAGAGTGCGACACAGATGATTCAATCCGTGACAACGCTGATTGGGGTGCTGATCATGATGCTTACGATCAGTCCTTTGAT
GACACTTGTGACACTGATTATTCTCCCGATTTCCATGCTGCTGATCGGATTTGTCATGAAGCATTCTCAGAAATATTTCC
GCGGACAGCAGGAGTATCTGGGAAATGTGAATGGACAGGTGGAAGAAGTTTACAGTGGTCACAGTATTATCAAGGCTTTT
AATAAAGAAGAAAATGTAATTGATGAGTTTGATGCAACCAATGACAAATTGTATGACTCTGCATGGAAATCGCAGTTCTT
TTCAGGAATGATGATGCCGATCATGCAGTTTATCGGAAATCTTGGCTATGTAGTCGTTGCGATTCTGGGAGGATTTCTGA
CGATCAAGAAAACGATTGAAGTGGGAGATATTCAGTCTTTCATTCAATATGTCAGAAGTTTTACACAGCCGATCCAGCAG
ATCGCACAGGTTGCAAATATGCTGCAGATGACAGCTGCGGCGTCCGAGAGAGTGTTTGAATTTCTGGAGGAAGAAGAGGA
AGATCAGACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACA
ATGCGGATAGGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGACCGACCGGA
GCAGGAAAGACAACGATGATCAAGCTTCTGATGCGATTCTACGATGTAAACAGCGGTGCGATCAAGATTGACGGACATGA
CGTCAGAGATTTCAACAGAAGTGAACTGCGTGAAATGTTCGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTA
TTTGGGACAACATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCAGGCAGCCAAGGCAGCTCATGTGCAT
CAGTTTGTGAAGACACTGCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGTCAGAAACA
GCTGTTGACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTTTGTAGATACAA
GGACAGAGGTATTGATCCAGAAAGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTGATTGCTCATCGTCTGTCA
ACGATTCGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGC
AAAAGGCGGATTCTATGCGGATCTGTATAACTCACAGTTTGAGAAAACAACGGAAGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-317)

ABC transporter (ABC_tran)

(381-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829NMY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.864

97.199

0.504

Multiple sequence alignment