Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFY6J_RS03550 Genome accession   NZ_OZ186712
Coordinates   731149..732972 (+) Length   607 a.a.
NCBI ID   WP_055169222.1    Uniprot ID   -
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD022     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 726149..737972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY6J_RS03530 rd 726589..726750 (-) 162 WP_004842991.1 rubredoxin -
  ACFY6J_RS03535 - 727053..728207 (+) 1155 WP_055169226.1 DUF4317 domain-containing protein -
  ACFY6J_RS03540 - 728415..728903 (+) 489 WP_004842994.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFY6J_RS03545 - 728922..731156 (+) 2235 WP_055169224.1 ABC transporter ATP-binding protein -
  ACFY6J_RS03550 rcrQ 731149..732972 (+) 1824 WP_055169222.1 ABC transporter ATP-binding protein Regulator
  ACFY6J_RS03555 moaC 733072..733575 (+) 504 WP_004842998.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACFY6J_RS03560 - 733572..734072 (+) 501 WP_055169220.1 molybdenum cofactor biosynthesis protein B -
  ACFY6J_RS03565 moaA 734045..735025 (+) 981 WP_055169218.1 GTP 3',8-cyclase MoaA -
  ACFY6J_RS03570 - 735032..735475 (+) 444 WP_024853045.1 MOSC domain-containing protein -
  ACFY6J_RS03575 prmA 735567..736523 (+) 957 WP_024853044.1 50S ribosomal protein L11 methyltransferase -
  ACFY6J_RS03580 - 736540..737280 (+) 741 WP_004843003.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67715.25 Da        Isoelectric Point: 5.3908

>NTDB_id=1168272 ACFY6J_RS03550 WP_055169222.1 731149..732972(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD022]
MPRHGHMGPQGADEKAKDLKGTLKKLLHYMSVFKVQMLLIVIFAVCGTTFTIIGPKILGKATTEIANGLMSKVSGGSGMD
FEKIGQILLLTLALYLVSTLCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDVDTLGQSLN
QSATQMIQSVTTLIGVLIMMLTISPLMTLVTLIILPISMLLIGFVMKHSQKYFRGQQEYLGNVNGQVEEVYSGHSIIKAF
NKEENVIDEFDATNDKLYDSAWKSQFFSGMMMPIMQFIGNLGYVVVAILGGFLTIKKTIEVGDIQSFIQYVRSFTQPIQQ
IAQVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADRIIVNDFSAEVKEGQKIAIVGPTG
AGKTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIWDNIKYGKLDATDEEVIRAAKAAHVH
QFVKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1168272 ACFY6J_RS03550 WP_055169222.1 731149..732972(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD022]
ATGCCTAGACATGGACATATGGGTCCGCAAGGAGCGGATGAAAAAGCAAAGGATTTAAAGGGAACACTTAAGAAATTGCT
TCATTATATGAGTGTATTCAAGGTGCAGATGCTGTTGATCGTGATCTTTGCAGTCTGCGGAACAACATTTACGATTATCG
GACCAAAGATTCTTGGAAAAGCAACAACGGAAATTGCCAACGGTCTGATGAGCAAAGTATCCGGCGGAAGCGGGATGGAC
TTTGAAAAGATTGGACAGATCCTGCTGCTGACACTTGCATTATATCTGGTCAGCACATTGTGCTCGTTTATTCAGGGATA
TCTGATGACGGGGGTTTCTCAGAAAACAACATACCGTTTGCGAAAAGAAATCTCAGAGAAGATCAATCGTATGCCGATGA
ACTATTTTGATACAAAACCAGTCGGAGAAGTGTTATCCAGAGTGACCAATGATGTTGATACACTGGGACAGAGTCTGAAC
CAGAGTGCGACACAGATGATTCAATCCGTGACAACGCTGATTGGGGTGCTGATCATGATGCTTACGATCAGTCCTTTGAT
GACACTTGTGACACTGATTATTCTCCCGATTTCCATGCTGCTGATCGGATTTGTCATGAAGCATTCTCAGAAATATTTCC
GCGGACAGCAGGAGTATCTGGGAAATGTGAATGGACAGGTGGAAGAAGTTTACAGTGGTCACAGTATTATCAAGGCTTTT
AATAAAGAAGAAAATGTAATTGATGAGTTTGATGCAACCAATGACAAATTGTATGACTCTGCATGGAAATCGCAGTTCTT
TTCAGGAATGATGATGCCGATCATGCAGTTTATCGGAAATCTTGGCTATGTAGTCGTTGCGATTCTGGGAGGATTTCTGA
CGATCAAGAAAACGATTGAAGTGGGAGATATTCAGTCTTTCATTCAATATGTCAGAAGTTTTACACAGCCGATCCAGCAG
ATCGCACAGGTTGCAAACATGCTGCAGATGACAGCTGCGGCGTCCGAGAGAGTGTTTGAATTTCTGGAGGAAGAAGAGGA
AGATCAGACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACA
ATGCGGATAGGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGACCGACCGGA
GCAGGAAAGACAACGATGATCAAGCTTCTGATGCGATTCTACGATGTAAACAGCGGTGCGATCAAGATTGACGGACATGA
CGTCAGAGATTTCAACAGAAGTGAACTGCGTGAAATGTTCGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTA
TCTGGGACAACATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCGGGCAGCCAAGGCAGCTCATGTGCAT
CAGTTTGTGAAGACACTGCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGTCAGAAACA
GCTGTTGACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTCTGTAGATACAA
GGACAGAGGTATTGATCCAGAAAGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTGATTGCTCATCGTCTGTCA
ACGATTCGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGC
AAAAGGCGGATTCTATGCGGATCTGTATAACTCACAGTTTGAGAAAACAACGGAAGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(381-529)

ABC transporter transmembrane region (ABC_membrane)

(37-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.034

97.199

0.506

Multiple sequence alignment