Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFY5Y_RS03880 Genome accession   NZ_OZ186709
Coordinates   811488..813305 (+) Length   605 a.a.
NCBI ID   WP_173880014.1    Uniprot ID   A0AAJ1B1L5
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD016     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 806488..818305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY5Y_RS03860 rd 806928..807089 (-) 162 WP_004842991.1 rubredoxin -
  ACFY5Y_RS03865 - 807392..808546 (+) 1155 WP_073962477.1 DUF4317 domain-containing protein -
  ACFY5Y_RS03870 - 808754..809242 (+) 489 WP_004842994.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFY5Y_RS03875 - 809261..811495 (+) 2235 WP_379689488.1 ABC transporter ATP-binding protein -
  ACFY5Y_RS03880 rcrQ 811488..813305 (+) 1818 WP_173880014.1 ABC transporter ATP-binding protein Regulator
  ACFY5Y_RS03885 moaC 813405..813908 (+) 504 WP_004842998.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACFY5Y_RS03890 - 813905..814405 (+) 501 WP_055169220.1 molybdenum cofactor biosynthesis protein B -
  ACFY5Y_RS03895 moaA 814378..815358 (+) 981 WP_055169218.1 GTP 3',8-cyclase MoaA -
  ACFY5Y_RS03900 - 815365..815808 (+) 444 WP_024853045.1 MOSC domain-containing protein -
  ACFY5Y_RS03905 prmA 815900..816856 (+) 957 WP_173882681.1 50S ribosomal protein L11 methyltransferase -
  ACFY5Y_RS03910 - 816873..817613 (+) 741 WP_379689491.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67561.04 Da        Isoelectric Point: 5.2930

>NTDB_id=1168238 ACFY5Y_RS03880 WP_173880014.1 811488..813305(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD016]
MPRPMGQGGTTEKAKDLKGTLKKLLHYMSVFKVQMFFIVIFAICGTAFTIVGPKILGKATTEIFNGLVSKVSGGSGMDFD
KIGQILLMTLGLYLISALCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDIDTLGQSLNQS
ATQMIQSVTTIIGVLIMMLTISPLMTLVTLVILPVSMVLISFVMKRSQKYFRGQQEYLGNVNGQVEEIYSGHNIIKAFNK
EEDVIQEFDTTNDKLYDSAWRSQFFSGMMMPIMQFIGNLGYVAVAILGGFLTIKKTIEVGDIQSFIQYVRSFTQPIQQIA
QVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADRIIVNDFSAEVKEGQKIAIVGPTGAG
KTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIRDNIKYGKLDATDEEVIQAAKAAHVHQF
VKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRLSTI
RDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1168238 ACFY5Y_RS03880 WP_173880014.1 811488..813305(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD016]
ATGCCTAGACCGATGGGACAGGGAGGAACAACTGAAAAAGCAAAGGATCTCAAGGGAACGCTGAAAAAGCTGCTCCATTA
TATGAGTGTTTTTAAAGTGCAGATGTTCTTCATTGTTATTTTTGCAATCTGCGGAACTGCTTTTACTATTGTAGGACCGA
AGATTTTAGGAAAAGCAACTACGGAAATTTTTAATGGACTGGTCAGTAAAGTGTCCGGCGGAAGTGGGATGGATTTTGAC
AAAATCGGTCAGATCCTCCTGATGACATTAGGGTTATATTTGATCAGTGCATTGTGTTCGTTTATCCAGGGATATCTGAT
GACGGGAGTTTCGCAGAAAACAACGTACCGTTTGCGTAAGGAGATTTCCGAGAAGATCAACCGGATGCCGATGAATTATT
TTGACACAAAACCGGTCGGAGAAGTACTCTCCAGAGTGACCAATGATATAGATACTTTGGGACAGAGTCTGAATCAGAGT
GCGACACAGATGATTCAATCCGTGACAACGATCATCGGTGTGCTGATCATGATGCTTACGATCAGTCCTCTGATGACACT
GGTCACATTAGTCATTCTGCCGGTCTCTATGGTTTTGATCTCGTTTGTAATGAAACGTTCTCAGAAATATTTCCGCGGAC
AGCAGGAATATCTGGGAAATGTGAACGGACAGGTGGAAGAAATCTACAGTGGACATAATATCATCAAAGCCTTTAATAAA
GAAGAGGATGTGATTCAGGAATTTGATACAACGAATGACAAATTGTACGATTCTGCATGGCGTTCTCAGTTCTTTTCCGG
AATGATGATGCCGATTATGCAGTTTATCGGAAACCTCGGTTATGTGGCAGTAGCCATCCTGGGAGGATTTCTGACGATCA
AGAAAACGATTGAAGTGGGAGATATTCAGTCTTTCATTCAATATGTCAGAAGTTTTACACAGCCGATCCAGCAGATCGCA
CAGGTTGCAAATATGCTGCAGATGACAGCTGCGGCGTCAGAGAGAGTGTTTGAATTTCTGGAGGAAGAAGAGGAAGATCA
GACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACAATGCGG
ATAGGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGACCGACCGGAGCAGGA
AAGACAACGATGATCAAGCTTCTGATGCGATTCTACGATGTAAACAGCGGTGCGATCAAGATTGACGGACATGACGTCAG
AGATTTCAACAGAAGTGAACTGCGTGAAATGTTCGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTATCCGGG
ACAACATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCAGGCAGCCAAGGCAGCTCATGTGCATCAGTTT
GTGAAGACACTGCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGTCAGAAACAGCTGTT
GACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTCTGTAGATACAAGGACAG
AGGTATTGATCCAGAAAGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTGATTGCTCATCGTCTGTCAACGATT
CGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGCAAAAGG
CGGATTCTATGCAGATCTGTATAACTCACAGTTTGAGAAAACAACGGAAGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-315)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.695

97.521

0.504

Multiple sequence alignment