Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFY5R_RS04080 Genome accession   NZ_OZ186418
Coordinates   845278..847101 (+) Length   607 a.a.
NCBI ID   WP_022037775.1    Uniprot ID   -
Organism   Mediterraneibacter gnavus isolate LUMC_Rgna_QRD001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 840278..852101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFY5R_RS04060 rd 840717..840878 (-) 162 WP_004842991.1 rubredoxin -
  ACFY5R_RS04065 - 841182..842336 (+) 1155 WP_073962477.1 DUF4317 domain-containing protein -
  ACFY5R_RS04070 - 842544..843032 (+) 489 WP_373269998.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFY5R_RS04075 - 843051..845285 (+) 2235 WP_101875114.1 ABC transporter ATP-binding protein -
  ACFY5R_RS04080 rcrQ 845278..847101 (+) 1824 WP_022037775.1 ABC transporter ATP-binding protein Regulator
  ACFY5R_RS04085 moaC 847201..847704 (+) 504 WP_156728881.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACFY5R_RS04090 - 847701..848201 (+) 501 WP_022037777.1 molybdenum cofactor biosynthesis protein B -
  ACFY5R_RS04095 moaA 848174..849154 (+) 981 WP_379694517.1 GTP 3',8-cyclase MoaA -
  ACFY5R_RS04100 - 849161..849604 (+) 444 WP_156728878.1 MOSC domain-containing protein -
  ACFY5R_RS04105 prmA 849696..850652 (+) 957 WP_022037780.1 50S ribosomal protein L11 methyltransferase -
  ACFY5R_RS04110 - 850669..851409 (+) 741 WP_156728877.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67712.13 Da        Isoelectric Point: 5.7960

>NTDB_id=1168172 ACFY5R_RS04080 WP_022037775.1 845278..847101(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD001]
MPRHGHMGPGGANEKAKDFKGTLKKLLHYMSVFKVQMAFIVIFAICGTVFDIVGPKILGKATTEIYNGLVSKVSGGSGMD
FGRIGQILLMTLGLYLISALCSFIQGYLMTGVSQKTTYRLRKEISEKINRMPMNYFDTKPVGEVLSRVTNDIDTLGQSLN
QSATQMITSVTTLIGVLAMMLSISPLMTLATLVILPVSMILISFVMKHSQKYFRGQQEYLGNVNGQVEEIYSGHNIIKAF
NKEEDVIREFDTTNDRLYDSAWRSQFFSGMMMPIMQFIGNLGYVVVAILGGFLAIRKTIEVGDIQSFIQYVKRFTQPIQQ
IAQVANMLQMTAAASERVFEFLEEEEEDQTVEHPVSVENLEGNVSFDHVHFGYNADKIIVNDFSAEVKEGQKIAIVGPTG
AGKTTMIKLLMRFYDVNSGAIKIDGHDVRDFNRSELREMFGMVLQDTWLFNGSIRDNIKYGKLDATDEEVIQAAKAAHVH
QFVKTLPGGYDMELNEEANNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFVIAHRLS
TIRDADMILVMKDGDIVEQGNHEELLAKGGFYADLYNSQFEKTTEVA

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1168172 ACFY5R_RS04080 WP_022037775.1 845278..847101(+) (rcrQ) [Mediterraneibacter gnavus isolate LUMC_Rgna_QRD001]
ATGCCTAGACATGGACATATGGGGCCGGGCGGCGCCAATGAGAAAGCAAAAGACTTTAAGGGAACGCTGAAAAAGCTTCT
TCATTATATGAGTGTCTTTAAAGTACAGATGGCATTTATTGTGATTTTTGCAATCTGTGGAACCGTTTTTGATATTGTAG
GACCGAAGATTTTAGGAAAGGCCACAACAGAGATTTATAATGGTCTGGTCAGTAAAGTGTCAGGCGGCAGTGGAATGGAC
TTTGGGAGAATTGGGCAGATTCTTCTGATGACATTGGGATTATATCTGATCAGCGCATTGTGTTCGTTTATCCAGGGCTA
TCTGATGACGGGAGTTTCCCAGAAAACAACATACCGTTTGCGTAAGGAGATTTCCGAGAAGATCAATCGGATGCCGATGA
ATTATTTTGATACAAAGCCGGTCGGAGAAGTACTCTCCAGAGTGACCAATGATATTGATACGCTGGGACAGAGTCTGAAC
CAGAGCGCGACACAGATGATCACGTCCGTGACAACATTGATCGGAGTACTGGCAATGATGCTTTCCATCAGCCCGTTGAT
GACATTGGCGACGCTGGTAATCCTGCCGGTCTCTATGATCCTGATTTCATTTGTGATGAAGCATTCACAGAAATATTTCC
GCGGACAGCAGGAATATCTGGGAAATGTGAATGGGCAGGTGGAAGAAATCTACAGTGGACATAATATCATCAAAGCCTTC
AATAAAGAGGAAGATGTGATTCGTGAGTTTGATACAACCAATGACAGGCTTTATGATTCCGCATGGCGTTCTCAGTTTTT
TTCCGGGATGATGATGCCGATCATGCAGTTTATCGGAAATCTCGGATATGTGGTGGTTGCGATTCTGGGAGGATTTCTGG
CGATCAGAAAGACAATTGAAGTAGGAGATATTCAGTCTTTTATTCAGTATGTGAAACGTTTTACACAGCCGATCCAGCAG
ATCGCACAGGTTGCGAACATGCTGCAGATGACGGCGGCGGCGTCCGAGAGAGTGTTTGAATTCCTGGAGGAAGAAGAGGA
AGATCAGACTGTGGAGCATCCGGTATCGGTAGAAAATCTGGAAGGAAATGTAAGCTTTGATCATGTTCATTTTGGATACA
ATGCGGATAAGATCATTGTCAATGACTTCTCAGCAGAAGTAAAAGAGGGGCAGAAAATTGCAATTGTAGGGCCGACCGGA
GCAGGAAAGACGACGATGATCAAGCTTCTGATGCGGTTCTACGATGTGAACAGCGGTGCCATCAAGATCGACGGACATGA
CGTCAGGGATTTCAACAGAAGTGAACTGCGTGAGATGTTCGGAATGGTGCTGCAGGATACCTGGCTGTTCAATGGAAGTA
TCCGGGACAATATCAAATACGGAAAACTGGATGCAACGGATGAAGAAGTGATCCAGGCAGCCAAGGCAGCTCATGTGCAT
CAGTTTGTGAAGACACTTCCGGGCGGATATGATATGGAACTGAATGAAGAAGCAAACAATGTGTCTCAGGGACAGAAACA
GCTGTTGACGATCGCGAGGGCAATTCTGGCAGATCCGAAGATCCTGATTCTGGATGAGGCGACAAGTTCTGTAGATACAA
GGACAGAGGTATTGATCCAGAAGGCCATGGATAACCTGATGAAGGGACGTACCAGCTTTGTAATCGCTCATCGTCTGTCA
ACGATCCGGGATGCAGATATGATCCTTGTTATGAAAGACGGAGATATCGTAGAGCAGGGAAATCACGAAGAACTTCTGGC
AAAAGGCGGATTCTATGCGGATCTGTATAACTCACAGTTTGAGAAAACAACGGAGGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(381-529)

ABC transporter transmembrane region (ABC_membrane)

(38-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.356

97.199

0.499

Multiple sequence alignment