Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB5Y62_RS16035 Genome accession   NZ_OZ078860
Coordinates   3510286..3510999 (+) Length   237 a.a.
NCBI ID   WP_181258648.1    Uniprot ID   -
Organism   Vibrio splendidus isolate A06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505286..3515999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS16020 - 3506135..3508465 (+) 2331 WP_368084918.1 Tex family protein -
  AB5Y62_RS16025 - 3508590..3509063 (-) 474 WP_004735616.1 hypothetical protein -
  AB5Y62_RS16030 bioH 3509410..3510192 (-) 783 WP_368084919.1 pimeloyl-ACP methyl ester esterase BioH -
  AB5Y62_RS16035 comF 3510286..3510999 (+) 714 WP_181258648.1 ComF family protein Machinery gene
  AB5Y62_RS16040 nfuA 3511109..3511693 (+) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  AB5Y62_RS16045 nudE 3512023..3512574 (+) 552 WP_017079321.1 ADP compounds hydrolase NudE -
  AB5Y62_RS16050 cysQ 3512611..3513438 (+) 828 WP_004735610.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AB5Y62_RS16055 - 3513584..3514363 (-) 780 WP_004735609.1 type II secretion system protein N -
  AB5Y62_RS16060 - 3514365..3514853 (-) 489 WP_368084920.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27244.56 Da        Isoelectric Point: 9.0234

>NTDB_id=1166601 AB5Y62_RS16035 WP_181258648.1 3510286..3510999(+) (comF) [Vibrio splendidus isolate A06]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDAHPRWCDSCLNLFESVPRCQRCGLKTLLTIEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLLNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1166601 AB5Y62_RS16035 WP_181258648.1 3510286..3510999(+) (comF) [Vibrio splendidus isolate A06]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGCAAGCTAGATAAGTCGCA
CAGCGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGTTTAA
AAACACTGCTCACAATAGAGCAGTGCGGACAGTGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAT
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACAGCTCAAGAACTTGGCGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTGACTAAATCCGCACGCTTACTTAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTAAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.508

99.578

0.553
  comF Vibrio campbellii strain DS40M4

50

100

0.515

Multiple sequence alignment