Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AB3213_RS08540 Genome accession   NZ_OZ061411
Coordinates   1673929..1674489 (-) Length   186 a.a.
NCBI ID   WP_056947508.1    Uniprot ID   A0AAX0VCZ0
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668929..1679489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3213_RS08510 rplA 1670159..1670848 (-) 690 WP_004270847.1 50S ribosomal protein L1 -
  AB3213_RS08515 rplK 1670947..1671372 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  AB3213_RS08520 - 1671498..1672361 (-) 864 WP_231952381.1 alpha/beta fold hydrolase -
  AB3213_RS08525 nusG 1672819..1673367 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  AB3213_RS08530 secE 1673465..1673638 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  AB3213_RS08535 rpmG 1673654..1673803 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  AB3213_RS08540 sigH 1673929..1674489 (-) 561 WP_056947508.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB3213_RS08545 - 1674567..1675100 (-) 534 WP_016265667.1 NYN domain-containing protein -
  AB3213_RS08550 rlmB 1675104..1675991 (-) 888 WP_082267809.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB3213_RS08555 - 1675978..1676385 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  AB3213_RS08560 cysS 1676382..1677788 (-) 1407 WP_056947506.1 cysteine--tRNA ligase -
  AB3213_RS08565 - 1678219..1679331 (-) 1113 WP_035146631.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22089.28 Da        Isoelectric Point: 7.4752

>NTDB_id=1166151 AB3213_RS08540 WP_056947508.1 1673929..1674489(-) (sigH) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1166151 AB3213_RS08540 WP_056947508.1 1673929..1674489(-) (sigH) [Latilactobacillus sakei isolate Latilactobacillus sakei CIRM-BIA1912]
ATGGAACAAACAAAGCGTGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAGTGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTTGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.774

100

0.968

Multiple sequence alignment