Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AB3Y89_RS09440 Genome accession   NZ_OZ061338
Coordinates   1815676..1816236 (-) Length   186 a.a.
NCBI ID   WP_101378062.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei J33     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810676..1821236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y89_RS09410 rplA 1811669..1812358 (-) 690 WP_004270847.1 50S ribosomal protein L1 -
  AB3Y89_RS09415 rplK 1812457..1812882 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  AB3Y89_RS09420 - 1813008..1813865 (-) 858 WP_061827132.1 alpha/beta fold hydrolase -
  AB3Y89_RS09425 nusG 1814566..1815114 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  AB3Y89_RS09430 secE 1815212..1815385 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  AB3Y89_RS09435 rpmG 1815401..1815550 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  AB3Y89_RS09440 sigH 1815676..1816236 (-) 561 WP_101378062.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB3Y89_RS09445 - 1816314..1816847 (-) 534 WP_016265667.1 NYN domain-containing protein -
  AB3Y89_RS09450 rlmB 1816851..1817738 (-) 888 WP_162100874.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB3Y89_RS09455 - 1817725..1818132 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  AB3Y89_RS09460 cysS 1818129..1819535 (-) 1407 WP_162100875.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22107.31 Da        Isoelectric Point: 7.4752

>NTDB_id=1166033 AB3Y89_RS09440 WP_101378062.1 1815676..1816236(-) (sigH) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSMDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1166033 AB3Y89_RS09440 WP_101378062.1 1815676..1816236(-) (sigH) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATGGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.237

100

0.962

Multiple sequence alignment