Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AB3225_RS03190 Genome accession   NZ_OZ061332
Coordinates   609031..609588 (-) Length   185 a.a.
NCBI ID   WP_035185909.1    Uniprot ID   A0AAJ0LDD0
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus J116     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 604031..614588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3225_RS03165 - 604347..604979 (+) 633 WP_076786783.1 CPBP family intramembrane glutamic endopeptidase -
  AB3225_RS03170 - 605032..605679 (-) 648 WP_076786782.1 redox-sensing transcriptional repressor Rex -
  AB3225_RS03175 - 605875..607818 (+) 1944 WP_076789313.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB3225_RS03180 - 607969..608328 (-) 360 WP_004265057.1 YccF domain-containing protein -
  AB3225_RS03185 - 608435..608752 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  AB3225_RS03190 sigH 609031..609588 (-) 558 WP_035185909.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB3225_RS03195 - 609664..610197 (-) 534 WP_004265051.1 NYN domain-containing protein -
  AB3225_RS03200 rlmB 610201..611088 (-) 888 WP_081395372.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB3225_RS03205 - 611075..611482 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  AB3225_RS03210 cysS 611479..612885 (-) 1407 WP_076786780.1 cysteine--tRNA ligase -
  AB3225_RS03215 - 613427..614539 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21709.91 Da        Isoelectric Point: 6.2310

>NTDB_id=1165955 AB3225_RS03190 WP_035185909.1 609031..609588(-) (sigH) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACSQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1165955 AB3225_RS03190 WP_035185909.1 609031..609588(-) (sigH) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTAGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment