Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB3Y92_RS12835 Genome accession   NZ_OZ061327
Coordinates   2471829..2474153 (-) Length   774 a.a.
NCBI ID   WP_058014560.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2466829..2479153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS12820 dtd 2468478..2468921 (-) 444 WP_058014561.1 D-aminoacyl-tRNA deacylase -
  AB3Y92_RS12825 - 2468940..2471150 (-) 2211 WP_012010732.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB3Y92_RS12830 - 2471293..2471805 (-) 513 WP_003216770.1 adenine phosphoribosyltransferase -
  AB3Y92_RS12835 recJ 2471829..2474153 (-) 2325 WP_058014560.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB3Y92_RS12840 - 2474235..2474588 (-) 354 WP_058014559.1 lipopolysaccharide assembly LapA domain-containing protein -
  AB3Y92_RS12845 - 2474690..2475178 (-) 489 WP_058014558.1 cation:proton antiporter regulatory subunit -
  AB3Y92_RS12850 secDF 2475365..2477593 (-) 2229 WP_058014557.1 protein translocase subunit SecDF -
  AB3Y92_RS12855 - 2477635..2477931 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87277.94 Da        Isoelectric Point: 4.8661

>NTDB_id=1165920 AB3Y92_RS12835 WP_058014560.1 2471829..2474153(-) (recJ) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFHDPFLLKGMKEAVERINKAIEQQ
ESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPAQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEEKDEAEELARFVQELNKE
RQKIVSTITEEAIQMVEETGDDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLRADDVPLLRERLNQYANETLTEEDFIPIQRVDAVCKVDELTVEAIEEVGMLSPFGMQN
PKPFIMIEDARLEEIRTIGANQNHIKMSLKDEDKLLDCVGFHQGQLKEEIVTGSRISVIGEMSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKTISTLDPEKYVVVCFDEETKEEVSIPIHHVHAENVSTLDVEGKYVVFADVPADEQLLRQLLE
NQKPARVYTVFQRKEDHFMSSFPSRDQFKWFYGFLLKRGSFPLKEQGMELAKHRGWTKDTMIFMTKVFFELGFVKIENGV
LSIVRDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=1165920 AB3Y92_RS12835 WP_058014560.1 2471829..2474153(-) (recJ) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCTGAATTTCATGATCCATTTCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCAATCGAACAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCGGATGGTGTGACAAGTACGTCTGTGCTTTTACATACATTAAAAGAGTT
GTCTGCGAAAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTACGGGCCTAATGAACAGGCTTTTCGATATATCA
AAGAGCAAGGCGCATCGCTTGTCATCACCGTCGATACAGGCATTGCAGCTGTAAATGAAGCGCGTATTGCAAAAGAAATA
GGGTTAGACTTGATCATTACAGATCACCATGAACCAAGCGAAGAGCTGCCTGAAGCACTTGCGATTGTCCATCCTAAGCA
GCCAGGCTGTGAGTATCCCTTTAAAGAACTTGCCGGTGTAGGCGTAGCATTTAAAGTGGCTCATGCTCTTCTTGGTAAGC
TGCCAGCTCAGCTGTTAGATCTTGCGGCAATTGGGACAATAGCGGATCTTGTGCCGCTTCATGATGAGAATAGATGGCTC
GCTAAAAAAGGGCTTATGCAGCTTCGGCAGTCGAATAGACCGGGACTGAAGGCGTTATTGAAAGAAGCAGGTGCTACTCT
TGAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCATCTTCTCATGACAGAGGAGAAGGATGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAACTGAATAAAGAA
CGTCAAAAAATTGTGAGTACGATCACAGAAGAAGCCATTCAAATGGTGGAAGAGACAGGTGATGACCAGTCTGCCATTGT
TGTAGCGAAAGCTGGCTGGAATCCGGGTGTTGTTGGAATTGTTGCCTCTAAATTGACGGATACATTTTCTCGTCCGGCAA
TTGTGCTTGGAATAGATGAAGAGACGCAAATGGCAAAAGGTTCAGCACGGAGTATTCCCGGCTTCGATCTATTTTTCCAT
TTAAGCAAATGCCGCGACATTCTGCCGCATTTCGGCGGGCACCCGATGGCTGCGGGCATGACACTTCGAGCGGATGATGT
CCCTTTACTAAGGGAAAGATTAAATCAATATGCGAATGAAACGTTGACAGAGGAAGACTTTATTCCGATTCAGCGGGTCG
ATGCTGTATGCAAGGTAGACGAATTGACGGTTGAAGCGATTGAAGAAGTGGGGATGCTGTCACCATTTGGCATGCAGAAT
CCAAAGCCGTTCATCATGATTGAAGATGCGAGACTTGAAGAAATCCGAACCATTGGAGCAAATCAAAATCATATCAAAAT
GTCTCTGAAAGATGAAGACAAACTGCTTGACTGTGTCGGTTTTCATCAAGGTCAATTGAAAGAAGAAATTGTCACAGGTA
GCCGGATTTCCGTCATTGGTGAAATGTCCATCAATGAATGGAATAACCGGAAGAAACCACAGCTCATGCTAAAAGATGCC
CGAGTAGATGAATGGCAGCTGTTTGATTTGCGCGGCAAAAAGGATTGGGAAAAGACAATCTCCACGCTTGACCCCGAAAA
ATATGTGGTGGTCTGTTTTGACGAAGAAACAAAAGAGGAAGTCAGCATCCCGATTCATCATGTCCATGCAGAAAATGTTT
CAACACTCGATGTTGAAGGCAAGTATGTCGTCTTTGCAGATGTCCCTGCAGATGAACAGTTGCTAAGGCAGCTGTTAGAA
AATCAAAAGCCAGCTAGAGTGTATACAGTTTTCCAAAGAAAAGAAGATCATTTCATGTCCTCTTTCCCTAGCCGTGATCA
ATTCAAATGGTTTTATGGATTCTTGTTAAAACGAGGAAGTTTCCCTCTCAAGGAACAAGGAATGGAGCTTGCGAAACATA
GAGGCTGGACAAAAGATACAATGATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTACGTGATGCCCCTAAAAAAGATTTAACGGCATCAGCATCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACATATTCCTCAGCCAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

DHHA1 domain (DHHA1)

(309-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.31

100

0.676

Multiple sequence alignment