Detailed information NTG1165919

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AB3Y92_RS12760
• Genome accession: NZ_OZ061327
• Coordinates: 2454439..2456823 (-)
• Length: 794 a.a.
• NCBI ID: WP_268466251.1
• Uniprot ID: -
• Organism: Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2449439..2461823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3Y92_RS12725	-	2450494..2451222 (+)	729	WP_058014574.1	amino acid ABC transporter ATP-binding protein	-
AB3Y92_RS12730	-	2451237..2452046 (+)	810	WP_058014573.1	transporter substrate-binding domain-containing protein	-
AB3Y92_RS12735	-	2452127..2452780 (+)	654	WP_058014572.1	amino acid ABC transporter permease	-
AB3Y92_RS12740	-	2452795..2453445 (+)	651	WP_058014571.1	amino acid ABC transporter permease	-
AB3Y92_RS12745	-	2453488..2453619 (-)	132	WP_003216198.1	YrzQ family protein	-
AB3Y92_RS12750	-	2453640..2453831 (-)	192	WP_003216308.1	hypothetical protein	-
AB3Y92_RS12755	-	2453845..2454303 (-)	459	WP_235567039.1	prc-barrel domain-containing protein	-
AB3Y92_RS12760	recD2	2454439..2456823 (-)	2385	WP_268466251.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AB3Y92_RS12765	-	2456843..2457496 (-)	654	WP_058014569.1	tetratricopeptide repeat protein	-
AB3Y92_RS12770	mnmA	2457557..2458675 (-)	1119	WP_003216305.1	tRNA 2-thiouridine(34) synthase MnmA	-
AB3Y92_RS12775	-	2458771..2459913 (-)	1143	WP_058014568.1	cysteine desulfurase family protein	-
AB3Y92_RS12780	-	2459932..2460351 (-)	420	WP_058014567.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88890.43 Da
• Isoelectric Point: 5.2642

>NTDB_id=1165919 AB3Y92_RS12760 WP_268466251.1 2454439..2456823(-) (recD2) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGSQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQFGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGSDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLIASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVLRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTGEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=1165919 AB3Y92_RS12760 WP_268466251.1 2454439..2456823(-) (recD2) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGAACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGCCACCCGAAGTTTGGTGAA
CAGTTTCAGGCAACTCATTTTCAAAAAGAAGTACCGACAACAAAGCAAGGAATTATTCATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGCAAAAAGACAGCGGAAGAAATTGTAGGACAGCTTGGCAGTCAGACGCTTCATAAAATTATGCGTGACC
CAGCGGTTTTGTATGACGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCCGCAGCGCTTCAGGAGCATCAAGGA
TTGGAACAAATTATGATCAGCCTCAATCAATTCGGCTTTGGTCCGCAGCTCAGCATGAAGATTTATCAAGTGTACGAGAG
TGAGACGCTGCAGAAGATTGAAGAAAACCCGTATCAGCTTGTCAAGGATGTCGAAGGGATCGGTTTTATTAAGGCAGATG
AACTTGGCGCTAGAACTGGCATCTCAGGAAGTGACCCAGAGCGGATCCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGTCTTCAGGACGGTCACACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGCAAGCTACTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCCAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAAACAA
CTGTCATTAAAGGCATTGTTGAGCTTTACAGCGACCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGAATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCACCGGCTGCTTGGTTGGAACGGATCAGAGGGCTTCTCGCATGATGAAGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCACTTGTTTAAAGCCATTCCTGACCATATCCAAGTGATC
ATGGTGGGAGATGAACATCAGCTTCCGTCTGTCGGACCAGGCCAAGTGTTAAGAGACTTGATTGCATCACAAGCCGTACC
AGCTGTTACCCTCACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAAGATATTACCGCACGTTCAAAAGACCGATCCTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTCATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCTAAAGACATTCAGGTGCTTGCGCCCATGTATAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGAGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAGAACAATATTTTTAACGGTGATATT
GGAGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGATATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACTTTTACTAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCATAAATCACAAGGTAGTGAAT
TTCCCATTGTTGTACTGCCAGTCTTGAGAAGCTACTACAGAATGCTTCGGCGAAATCTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCACTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTCGTGCAAACAGGAGAGGTCATGGATGCGGAGCTTGCAGCACTTCAAAAAGAACTGCCGT
TTAGCGTACATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• AAA domain (AAA_30) (345-553)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	79.748	100	0.798