Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB3Y92_RS08465 Genome accession   NZ_OZ061327
Coordinates   1647020..1647799 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642020..1652799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS08445 trmFO 1642724..1644028 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3Y92_RS08450 xerC 1644091..1645008 (+) 918 WP_058013999.1 tyrosine recombinase XerC -
  AB3Y92_RS08455 hslV 1645023..1645568 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  AB3Y92_RS08460 hslU 1645585..1646985 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  AB3Y92_RS08465 codY 1647020..1647799 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB3Y92_RS08470 flgB 1648086..1648475 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AB3Y92_RS08475 flgC 1648475..1648927 (+) 453 WP_058013998.1 flagellar basal body rod protein FlgC -
  AB3Y92_RS08480 fliE 1648939..1649256 (+) 318 WP_058013997.1 flagellar hook-basal body complex protein FliE -
  AB3Y92_RS08485 fliF 1649306..1650898 (+) 1593 WP_058013996.1 flagellar basal-body MS-ring/collar protein FliF -
  AB3Y92_RS08490 fliG 1650910..1651926 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  AB3Y92_RS08495 fliH 1651919..1652683 (+) 765 WP_058013995.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=1165907 AB3Y92_RS08465 WP_003210838.1 1647020..1647799(+) (codY) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1165907 AB3Y92_RS08465 WP_003210838.1 1647020..1647799(+) (codY) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAATTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCTCGCTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment