Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AB3221_RS09290 Genome accession   NZ_OZ061323
Coordinates   1768357..1768914 (-) Length   185 a.a.
NCBI ID   WP_035185909.1    Uniprot ID   A0AAJ0LDD0
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763357..1773914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3221_RS09265 - 1763673..1764305 (+) 633 WP_004265005.1 CPBP family intramembrane glutamic endopeptidase -
  AB3221_RS09270 - 1764358..1765005 (-) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  AB3221_RS09275 - 1765201..1767144 (+) 1944 WP_367370197.1 ABC-F family ATP-binding cassette domain-containing protein -
  AB3221_RS09280 - 1767295..1767654 (-) 360 WP_004265057.1 YccF domain-containing protein -
  AB3221_RS09285 - 1767761..1768078 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  AB3221_RS09290 sigH 1768357..1768914 (-) 558 WP_035185909.1 sigma-70 family RNA polymerase sigma factor Regulator
  AB3221_RS09295 - 1768990..1769523 (-) 534 WP_223315566.1 NYN domain-containing protein -
  AB3221_RS09300 rlmB 1769527..1770414 (-) 888 WP_004265172.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AB3221_RS09305 - 1770401..1770808 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  AB3221_RS09310 cysS 1770805..1772211 (-) 1407 WP_004265043.1 cysteine--tRNA ligase -
  AB3221_RS09315 - 1772757..1773869 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21709.91 Da        Isoelectric Point: 6.2310

>NTDB_id=1165876 AB3221_RS09290 WP_035185909.1 1768357..1768914(-) (sigH) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACSQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1165876 AB3221_RS09290 WP_035185909.1 1768357..1768914(-) (sigH) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTAGCCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719

Multiple sequence alignment