Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AB3Y84_RS10675 Genome accession   NZ_OZ061291
Coordinates   2150493..2151431 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2145493..2156431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS10650 frr 2145611..2146168 (-) 558 WP_004254618.1 ribosome recycling factor -
  AB3Y84_RS10655 pyrH 2146380..2147096 (-) 717 WP_021464089.1 UMP kinase -
  AB3Y84_RS10660 - 2147181..2147633 (-) 453 WP_098384237.1 hypothetical protein -
  AB3Y84_RS10665 - 2147767..2148954 (-) 1188 WP_367293993.1 acetate kinase -
  AB3Y84_RS10670 - 2149111..2150298 (-) 1188 WP_004254593.1 acetate kinase -
  AB3Y84_RS10675 comYH 2150493..2151431 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  AB3Y84_RS10680 - 2151519..2151770 (-) 252 WP_004254583.1 DUF3165 family protein -
  AB3Y84_RS10685 typA 2151871..2153703 (-) 1833 WP_025016832.1 translational GTPase TypA -
  AB3Y84_RS10690 - 2153891..2154333 (-) 443 Protein_2074 hypothetical protein -
  AB3Y84_RS10695 - 2154396..2154752 (-) 357 WP_367293994.1 hypothetical protein -
  AB3Y84_RS10700 - 2154765..2155391 (-) 627 Protein_2076 ABC transporter ATP-binding protein -
  AB3Y84_RS10705 - 2155392..2155949 (-) 558 WP_257140922.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=1165715 AB3Y84_RS10675 WP_012898520.1 2150493..2151431(-) (comYH) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1165715 AB3Y84_RS10675 WP_012898520.1 2150493..2151431(-) (comYH) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAGAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment