Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB3235_RS01420 Genome accession   NZ_OZ061221
Coordinates   284839..286671 (+) Length   610 a.a.
NCBI ID   WP_010781999.1    Uniprot ID   -
Organism   Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 279839..291671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3235_RS01405 - 279944..281767 (+) 1824 WP_367377458.1 APC family permease -
  AB3235_RS01410 - 281997..282443 (+) 447 WP_010782001.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB3235_RS01415 - 282443..284824 (+) 2382 WP_010782000.1 ABC transporter ATP-binding protein -
  AB3235_RS01420 rcrQ 284839..286671 (+) 1833 WP_010781999.1 ABC transporter ATP-binding protein Regulator
  AB3235_RS01425 - 286736..287320 (-) 585 WP_367377459.1 hypothetical protein -
  AB3235_RS01430 - 287310..288317 (-) 1008 WP_367377460.1 DUF4947 domain-containing protein -
  AB3235_RS01435 - 288589..289227 (+) 639 WP_367378539.1 L-fuculose-phosphate aldolase -
  AB3235_RS01440 - 289260..290300 (+) 1041 Protein_286 2-hydroxyacid dehydrogenase -
  AB3235_RS01445 - 290345..291334 (-) 990 WP_316406274.1 transketolase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 67714.29 Da        Isoelectric Point: 6.3342

>NTDB_id=1165519 AB3235_RS01420 WP_010781999.1 284839..286671(+) (rcrQ) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MAEQKQNRPRGGGHGPVGAPVEKAKDFKGTIKKLVSYLGAYKIGVFFVMIFAIASTIFNIWGPKILSKAITELFNGLIKK
YQGTGDINFDKIGGILLFMLGLYVAASVFGIIQGWIMSTISQKITYRMRKEISEKINRMPMNYFESRTTGEVLSRITNDV
DTLGQSLNQSLTQLITSTFTIIGVIVMMLSISVKMTGVAILIVPISLILIMIVVKNSQKYFKTQQEYLGVINGKVEETIG
GYTIVRLFNDEENSLTEFKEQNDILFKSAWKSQFLSGLMQPIMNFVGNLGYVGVAIVGGIMAYNGSITVGDIQAFIQYVR
NLTQPIAQLAQVSNMLQSMAAAAERVFEFLSEEEEDQMAENPVQIDKAKGMVDFEHVQFGYTPDKIVIQDFTSHVDPGQT
VAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKDFNRADLRKNIGMVLQDTWLFKGTIMDNLRYGRLDATDEEVYA
AAKAAHVDHFIKTLPGGYDMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMKGRTS
FVIAHRLSTIKDADKILYMQNGDIKEQGSHEELLAKNGLYAALYNSQFEE

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1165519 AB3235_RS01420 WP_010781999.1 284839..286671(+) (rcrQ) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGGCAGAACAAAAACAAAATCGCCCTCGTGGTGGCGGACATGGACCTGTGGGCGCACCAGTAGAAAAAGCCAAAGATTT
CAAAGGAACCATTAAGAAATTAGTCTCTTATCTGGGTGCTTACAAAATCGGTGTGTTCTTTGTAATGATTTTCGCGATTG
CCTCAACGATATTTAATATTTGGGGCCCGAAAATCTTATCAAAGGCGATTACTGAATTATTCAATGGATTAATCAAAAAA
TATCAAGGAACGGGCGATATCAATTTTGATAAAATCGGCGGTATCCTATTATTCATGCTAGGTCTCTACGTGGCAGCTTC
TGTATTTGGGATCATCCAAGGATGGATCATGTCAACGATCTCGCAAAAGATCACGTATCGGATGCGAAAAGAAATCTCTG
AAAAAATCAATCGGATGCCGATGAATTATTTCGAGAGTCGTACAACGGGTGAAGTGTTGTCTCGCATCACAAACGACGTG
GATACGCTCGGACAATCCTTGAACCAAAGTTTGACACAACTGATCACTTCAACCTTCACAATCATTGGGGTTATCGTCAT
GATGCTTTCGATTTCAGTGAAGATGACGGGTGTGGCGATCTTGATCGTACCGATCTCACTGATTTTGATCATGATCGTTG
TAAAAAATTCGCAAAAATACTTCAAGACACAACAAGAATACCTTGGTGTGATCAACGGAAAAGTAGAAGAAACCATTGGC
GGCTACACCATCGTTCGTTTATTCAATGACGAAGAAAACTCGTTGACTGAATTTAAGGAACAAAACGATATCTTATTCAA
GTCAGCATGGAAATCACAATTTCTTTCTGGATTGATGCAGCCGATCATGAACTTTGTCGGTAACTTAGGGTATGTTGGCG
TGGCGATCGTCGGCGGGATCATGGCGTATAATGGTTCGATCACCGTTGGGGATATCCAGGCGTTTATTCAATACGTTCGT
AATTTGACACAACCAATTGCACAATTGGCCCAAGTATCAAATATGCTGCAATCAATGGCTGCAGCGGCTGAACGAGTCTT
TGAATTCTTATCTGAAGAGGAAGAAGATCAAATGGCTGAAAATCCTGTCCAAATTGACAAGGCAAAAGGAATGGTTGATT
TTGAGCATGTTCAATTCGGGTATACACCTGACAAGATCGTTATCCAAGACTTTACGTCTCATGTTGATCCAGGTCAGACA
GTTGCGATCGTTGGTCCAACAGGGGCCGGGAAAACAACCATGGTCAAATTATTGATGCGTTTCTATGATGTCAATTCTGG
TGCGATCAAGATTGATGGGCATAACATCAAAGATTTCAATCGTGCAGATTTACGTAAAAATATTGGGATGGTGTTACAAG
ATACATGGTTGTTCAAAGGGACGATCATGGACAATCTTCGTTACGGTCGTTTAGATGCAACGGATGAAGAAGTCTACGCA
GCAGCAAAAGCGGCTCACGTGGATCATTTCATCAAGACGCTTCCTGGCGGCTATGATATGGAGTTGAATGAAGAATCCTC
CAATATTTCCCAAGGTCAAAAGCAATTATTAACAATTGCACGTGCGATCTTGGCAGATAAACCGATCTTGATTCTGGATG
AGGCTACTTCGTCTGTCGATACACGAACAGAAGGACTGATCCAAGAAGCGATGAACAATTTAATGAAGGGCAGAACCTCC
TTCGTTATCGCTCACCGTTTATCAACGATCAAAGATGCAGACAAGATTCTCTATATGCAAAATGGAGACATCAAGGAGCA
AGGAAGCCACGAAGAACTCTTGGCTAAAAATGGTCTTTACGCGGCATTGTATAATTCGCAGTTTGAGGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(45-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

95.574

0.492

Multiple sequence alignment