Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ACE4RJ_RS10995 Genome accession   NZ_OZ059821
Coordinates   2245027..2246097 (-) Length   356 a.a.
NCBI ID   WP_000776425.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate H3_23S01314-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2240027..2251097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RJ_RS10955 gcvT 2240238..2241329 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ACE4RJ_RS10960 - 2241488..2242012 (-) 525 WP_001015120.1 shikimate kinase -
  ACE4RJ_RS10965 - 2242002..2242148 (-) 147 WP_001789879.1 hypothetical protein -
  ACE4RJ_RS10970 - 2242215..2243386 (-) 1172 Protein_2162 IS256 family transposase -
  ACE4RJ_RS10975 comGF 2243577..2244074 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACE4RJ_RS10980 comGE 2243992..2244291 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACE4RJ_RS10985 comGD 2244278..2244724 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACE4RJ_RS10990 comGC 2244702..2245013 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACE4RJ_RS10995 comGB 2245027..2246097 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACE4RJ_RS11000 comGA 2246069..2247043 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACE4RJ_RS11005 - 2247095..2247718 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACE4RJ_RS11010 - 2247715..2248044 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACE4RJ_RS11015 - 2248044..2249030 (-) 987 WP_000161315.1 ROK family glucokinase -
  ACE4RJ_RS11020 - 2249027..2249230 (-) 204 WP_000087559.1 YqgQ family protein -
  ACE4RJ_RS11025 - 2249211..2250674 (-) 1464 WP_001017856.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41489.97 Da        Isoelectric Point: 10.1030

>NTDB_id=1165262 ACE4RJ_RS10995 WP_000776425.1 2245027..2246097(-) (comGB) [Staphylococcus aureus isolate H3_23S01314-1]
MKLQWINTFKLHSKKRQLSKVQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1165262 ACE4RJ_RS10995 WP_000776425.1 2245027..2246097(-) (comGB) [Staphylococcus aureus isolate H3_23S01314-1]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGTCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGTTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment