Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AABJ57_RS05355 Genome accession   NZ_OY754859
Coordinates   998074..998589 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter coli isolate Reference     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 993074..1003589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ57_RS05330 - 993530..993868 (+) 339 WP_002777761.1 hypothetical protein -
  AABJ57_RS05335 - 993877..994602 (+) 726 WP_002792130.1 phosphatidate cytidylyltransferase -
  AABJ57_RS05340 dxr 994599..995675 (+) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AABJ57_RS05345 - 995672..997066 (+) 1395 WP_002788428.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AABJ57_RS05350 tsaD 997063..998070 (+) 1008 WP_338371034.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AABJ57_RS05355 ctsG 998074..998589 (+) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AABJ57_RS05360 - 998589..999830 (+) 1242 WP_338371037.1 DUF2920 family protein -
  AABJ57_RS05365 - 999842..1001665 (+) 1824 WP_338371039.1 motility associated factor glycosyltransferase family protein -
  AABJ57_RS05370 - 1001662..1003479 (+) 1818 WP_338371041.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=1161375 AABJ57_RS05355 WP_002799196.1 998074..998589(+) (ctsG) [Campylobacter coli isolate Reference]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1161375 AABJ57_RS05355 WP_002799196.1 998074..998589(+) (ctsG) [Campylobacter coli isolate Reference]
GTGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment