Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   AABI57_RS03985 Genome accession   NZ_OY754852
Coordinates   750400..751137 (-) Length   245 a.a.
NCBI ID   WP_002780246.1    Uniprot ID   A0A5T1L8T6
Organism   Campylobacter coli isolate Reference     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745400..756137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABI57_RS03945 - 745513..746274 (+) 762 WP_025431509.1 ATP-binding protein -
  AABI57_RS03950 - 746271..746954 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  AABI57_RS03955 thiD 746954..747766 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AABI57_RS03960 thiE 747756..748388 (+) 633 WP_002783359.1 thiamine phosphate synthase -
  AABI57_RS03965 - 748366..748995 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  AABI57_RS03970 - 748988..749440 (-) 453 WP_002777117.1 hypothetical protein -
  AABI57_RS03975 - 749437..750105 (-) 669 WP_002790524.1 hypothetical protein -
  AABI57_RS03980 - 750098..750403 (-) 306 WP_002790525.1 hypothetical protein -
  AABI57_RS03985 proC 750400..751137 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  AABI57_RS03990 fliW 751137..751526 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  AABI57_RS03995 bamD 751690..752337 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  AABI57_RS04000 lon 752353..754728 (+) 2376 WP_002783351.1 endopeptidase La -
  AABI57_RS04005 rpsR 754784..755044 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  AABI57_RS04010 - 755055..755603 (-) 549 WP_002777084.1 single-stranded DNA-binding protein -
  AABI57_RS04015 rpsF 755612..755989 (-) 378 WP_002777082.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26797.20 Da        Isoelectric Point: 9.3032

>NTDB_id=1161334 AABI57_RS03985 WP_002780246.1 750400..751137(-) (proC) [Campylobacter coli isolate Reference]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1161334 AABI57_RS03985 WP_002780246.1 750400..751137(-) (proC) [Campylobacter coli isolate Reference]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAAGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(7-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1L8T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

80.833

97.959

0.792

Multiple sequence alignment