Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AABI57_RS02605 Genome accession   NZ_OY754852
Coordinates   482792..483307 (+) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli isolate Reference     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477792..488307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABI57_RS02580 - 478248..478586 (+) 339 WP_002777761.1 hypothetical protein -
  AABI57_RS02585 - 478595..479320 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  AABI57_RS02590 dxr 479317..480393 (+) 1077 WP_215474539.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AABI57_RS02595 - 480390..481784 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AABI57_RS02600 tsaD 481781..482788 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AABI57_RS02605 ctsG 482792..483307 (+) 516 WP_002838045.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AABI57_RS02610 - 483307..484548 (+) 1242 WP_002853665.1 DUF2920 family protein -
  AABI57_RS02615 - 484558..486408 (+) 1851 WP_072232242.1 motility associated factor glycosyltransferase family protein -
  AABI57_RS02620 - 486503..488224 (+) 1722 WP_338354278.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=1161327 AABI57_RS02605 WP_002838045.1 482792..483307(+) (ctsG) [Campylobacter coli isolate Reference]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1161327 AABI57_RS02605 WP_002838045.1 482792..483307(+) (ctsG) [Campylobacter coli isolate Reference]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment