Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACI6PJ_RS11435 Genome accession   NZ_OY724180
Coordinates   2299421..2301127 (-) Length   568 a.a.
NCBI ID   WP_034544078.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain IMDO 1MG81     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294421..2306127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PJ_RS11420 (CP1MG81_KIAHCBLE_02293) - 2295612..2296334 (+) 723 WP_025085143.1 GntR family transcriptional regulator -
  ACI6PJ_RS11425 (CP1MG81_KIAHCBLE_02294) - 2296385..2297116 (-) 732 WP_056955810.1 GntR family transcriptional regulator -
  ACI6PJ_RS11430 (CP1MG81_KIAHCBLE_02295) - 2297179..2298828 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PJ_RS11435 (CP1MG81_KIAHCBLE_02296) rcrQ 2299421..2301127 (-) 1707 WP_034544078.1 ABC transporter ATP-binding protein Regulator
  ACI6PJ_RS11440 (CP1MG81_KIAHCBLE_02297) rcrP 2301124..2302890 (-) 1767 WP_025085145.1 ABC transporter ATP-binding protein Regulator
  ACI6PJ_RS11445 (CP1MG81_KIAHCBLE_02298) - 2302936..2303400 (-) 465 WP_158136974.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PJ_RS11450 (CP1MG81_KIAHCBLE_02299) - 2304009..2304692 (-) 684 WP_056955811.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 62858.96 Da        Isoelectric Point: 9.0085

>NTDB_id=1160420 ACI6PJ_RS11435 WP_034544078.1 2299421..2301127(-) (rcrQ) [Companilactobacillus paralimentarius strain IMDO 1MG81]
MKVIDGIKKYGSEYIKPLIIAIVFAMAGSIFTIVGPSQLSKITDLISKGLFGKIDLTKVMHIVIILTAIYVAAAVLSYGQ
GYIMATITQRFTQKLRTKITEKINNLPLQYFDTHNEGDTLSRVTNDLDTVGQSLNQSLGLLVSAVTLLLGSIVMMFTTNI
KLGTTAVLSVLVGFALTILLISKSQRYIYNQQNKLADVSGYLEEIYAGHDVVKTYNYTNQAKQEFTQLNDDLQTNVWKSQ
FLSGIMQPLMNFIGNFGYVMVSVVGAVLVLKGQISIGVIVAFMIYVRLFTQPLSQITQAFTSLQSAQAAMKRVFNFLGEA
EVEADADKQTLSGAKGNVKFDNVEFGYLLDQKIIKNFSMKAKAGQKVAIVGPTGSGKTTTVNLLMRFYDLNGGKITIDGV
DIKDMPRSNVRNQFDMVLQEAWIFEDTVRNNLVYNQKNISDEQIKAATKAVDLDHFIETLPNGYDTVLDDSVSLSVGQKQ
LLTIARALIRNAPMLILDEATSSVDTRTEEQIQKAMDVLMKGRTSFVIAHRLSTIKNADLILVVKDGEIIERGTHKELMA
QNGFYTNM

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=1160420 ACI6PJ_RS11435 WP_034544078.1 2299421..2301127(-) (rcrQ) [Companilactobacillus paralimentarius strain IMDO 1MG81]
ATGAAAGTAATTGATGGAATTAAGAAATATGGTTCCGAATATATTAAGCCATTGATTATAGCAATTGTCTTTGCCATGGC
AGGTAGTATCTTCACAATTGTGGGTCCTAGTCAATTAAGCAAGATCACTGATTTAATCAGTAAAGGTCTATTTGGAAAAA
TTGATTTAACAAAAGTTATGCATATTGTAATAATCTTGACCGCTATTTACGTAGCTGCTGCGGTCCTATCATATGGTCAA
GGTTATATTATGGCTACTATTACTCAACGTTTTACTCAAAAGTTAAGAACTAAAATAACTGAAAAGATTAATAATTTACC
GTTACAATACTTTGATACTCATAATGAAGGTGACACTTTAAGTCGAGTAACCAACGATTTGGATACTGTTGGTCAATCAT
TGAATCAAAGTTTAGGATTATTAGTTTCAGCTGTAACATTGCTTTTAGGTAGTATCGTTATGATGTTTACTACTAATATT
AAATTAGGAACAACTGCCGTTTTGTCAGTGTTAGTAGGATTTGCTTTGACAATACTGTTAATCTCAAAATCACAACGTTA
CATTTACAATCAACAGAACAAATTAGCTGATGTTTCAGGCTATTTGGAAGAGATCTATGCTGGACATGATGTTGTAAAAA
CTTATAACTATACGAACCAAGCAAAGCAAGAATTCACACAATTGAATGATGATCTACAGACAAATGTTTGGAAATCACAA
TTTTTATCAGGAATAATGCAACCGTTGATGAATTTCATTGGTAACTTTGGTTACGTAATGGTCAGTGTTGTCGGCGCTGT
TTTAGTATTGAAAGGTCAAATCAGTATTGGTGTAATTGTAGCTTTTATGATCTATGTACGATTGTTTACGCAACCTCTAT
CACAGATTACACAGGCTTTTACCAGCTTGCAATCAGCTCAAGCAGCTATGAAACGAGTTTTTAATTTTCTCGGTGAAGCA
GAAGTTGAAGCAGATGCTGACAAGCAAACCTTATCTGGTGCGAAAGGAAATGTTAAATTTGATAATGTTGAATTCGGTTA
TCTGCTAGATCAGAAAATCATTAAGAATTTCTCGATGAAAGCAAAGGCAGGACAAAAAGTCGCCATTGTTGGTCCAACGG
GATCAGGTAAGACAACTACTGTTAACTTATTAATGCGTTTCTATGATTTGAATGGCGGAAAAATTACGATCGATGGTGTT
GATATTAAAGATATGCCACGTTCCAACGTTAGAAATCAGTTCGATATGGTTCTGCAGGAGGCCTGGATTTTCGAGGATAC
TGTTAGAAATAATTTAGTTTACAATCAAAAAAATATTTCAGATGAACAAATTAAAGCCGCAACCAAGGCTGTCGATTTGG
ATCATTTTATTGAAACACTACCAAACGGTTACGATACTGTTCTGGATGATTCAGTGAGCCTCTCAGTGGGACAAAAGCAA
TTATTGACAATTGCACGGGCTCTAATTAGAAACGCTCCTATGTTGATTTTGGATGAAGCAACTAGTTCAGTTGATACTAG
AACTGAAGAACAGATTCAAAAGGCAATGGATGTTTTGATGAAGGGCAGAACATCATTTGTCATTGCGCATCGACTTTCAA
CTATTAAGAATGCTGATTTGATCTTAGTAGTTAAAGATGGAGAGATTATTGAACGAGGAACTCATAAAGAGTTGATGGCA
CAGAATGGTTTCTACACAAATATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(355-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.909

96.831

0.59

Multiple sequence alignment