Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACI6PF_RS11275 Genome accession   NZ_OY724138
Coordinates   2268967..2270697 (-) Length   576 a.a.
NCBI ID   WP_309510700.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain R19079     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2263967..2275697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PF_RS11260 (CPR19079_NPKGKJFF_02259) - 2265182..2265904 (+) 723 WP_025085143.1 GntR family transcriptional regulator -
  ACI6PF_RS11265 (CPR19079_NPKGKJFF_02260) - 2265955..2266686 (-) 732 WP_056955810.1 GntR family transcriptional regulator -
  ACI6PF_RS11270 (CPR19079_NPKGKJFF_02261) - 2266749..2268398 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PF_RS11275 (CPR19079_NPKGKJFF_02262) rcrQ 2268967..2270697 (-) 1731 WP_309510700.1 ABC transporter ATP-binding protein Regulator
  ACI6PF_RS11280 (CPR19079_NPKGKJFF_02263) rcrP 2270694..2272460 (-) 1767 WP_404327436.1 ABC transporter ATP-binding protein Regulator
  ACI6PF_RS11285 (CPR19079_NPKGKJFF_02264) - 2272506..2272970 (-) 465 WP_158136974.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PF_RS11290 (CPR19079_NPKGKJFF_02265) - 2273579..2274262 (-) 684 WP_056955811.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63857.02 Da        Isoelectric Point: 8.9890

>NTDB_id=1160368 ACI6PF_RS11275 WP_309510700.1 2268967..2270697(-) (rcrQ) [Companilactobacillus paralimentarius strain R19079]
MKVIDGIKKYGSEYIKPLIIAIVFAMAGSIFTIVGPSQLSKITDLISKGLFGKIDLTKVMHIVIILTAIYVAAAVLSYGQ
GYIMATITQRFTQKLRTKITEKINNLPLQYFDTHNEGDTLSRVTNDLDTVGQSLNQSLGLLVSAVTLLLGSIVMMFTTNI
KLGTTAVLSVLVGFALTILLISKSQRYIYNQQNKLADVSGYLEEIYAGHDVVKTYNYTNQAKQEFTQLNDDLQTNVWKSQ
FLSGIMQPLMNFIGNFGYVMVSVVGAVLVLKGQISIGVIVAFMIYVRLFTQPLSQITQAFTSLQSAQAAMKRVFNFLGEA
EVEADADKQTLSGAKGNVKFDNVEFGYLLDQKIIKNFSMKAKAGQKVAIVGPTGSGKTTTVNLLMRFYDLNGGKITIDGV
DIKDMPRSNVRNQFDMVLQEAWIFEDTVRNNLVYNQKNISDEQIKAATKAVDLDHFIETLPNGYDTVLDDSVSLSVGQKQ
LLTIARALIRNAPMLILDEATSSVDTRTEEQIQKAMDVLMKGRTSFVIAHRLSTIKNADLILVVKDGEIIERGTHKELMA
QNGFYTNMYNSQFTKE

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1160368 ACI6PF_RS11275 WP_309510700.1 2268967..2270697(-) (rcrQ) [Companilactobacillus paralimentarius strain R19079]
ATGAAAGTAATTGATGGAATTAAGAAATATGGTTCCGAATATATTAAGCCATTGATTATAGCAATTGTCTTTGCCATGGC
AGGTAGTATCTTCACAATTGTGGGTCCTAGTCAATTAAGCAAGATCACTGATTTAATCAGTAAAGGTCTATTTGGAAAAA
TTGATTTAACAAAAGTTATGCATATTGTAATAATCTTGACCGCTATTTACGTAGCTGCTGCGGTCCTATCATATGGTCAA
GGTTATATTATGGCTACTATTACTCAACGTTTTACTCAAAAGTTAAGAACTAAAATAACTGAAAAGATTAATAATTTACC
GTTACAATACTTTGATACTCATAATGAAGGTGACACTTTAAGTCGAGTAACCAACGATTTGGATACTGTTGGTCAATCAT
TGAATCAAAGTTTAGGATTATTAGTTTCAGCTGTAACATTGCTTTTAGGTAGTATCGTTATGATGTTTACTACTAATATT
AAATTAGGAACAACTGCCGTTTTGTCAGTGTTAGTAGGATTTGCTTTGACAATACTGTTAATCTCAAAATCACAACGTTA
CATTTACAATCAACAGAACAAATTAGCTGATGTTTCAGGCTATTTGGAAGAGATCTATGCTGGACATGATGTTGTAAAAA
CTTATAACTATACGAACCAAGCAAAGCAAGAATTCACACAATTGAATGATGATCTACAGACAAATGTTTGGAAATCACAA
TTTTTATCAGGAATAATGCAACCGTTGATGAATTTCATTGGTAACTTTGGTTACGTAATGGTCAGTGTTGTCGGCGCTGT
TTTAGTATTGAAAGGTCAAATCAGTATTGGTGTAATTGTAGCTTTTATGATCTATGTACGATTGTTTACGCAACCTCTAT
CACAGATTACACAGGCTTTTACCAGCTTGCAATCAGCTCAAGCAGCTATGAAACGAGTTTTTAATTTTCTCGGTGAAGCA
GAAGTTGAAGCAGATGCTGACAAGCAAACCTTATCTGGTGCGAAAGGAAATGTTAAATTTGATAATGTTGAATTCGGTTA
TCTGCTAGATCAGAAAATCATTAAGAATTTCTCGATGAAAGCAAAGGCAGGACAAAAAGTCGCCATTGTTGGTCCAACGG
GATCAGGTAAGACAACTACTGTTAACTTATTAATGCGTTTCTATGATTTGAATGGCGGAAAAATTACGATCGATGGTGTT
GATATTAAAGATATGCCACGTTCCAACGTTAGAAATCAGTTCGATATGGTTCTGCAGGAGGCCTGGATTTTCGAGGATAC
TGTTAGAAATAATTTAGTTTACAATCAAAAAAATATTTCAGATGAACAAATTAAAGCCGCAACCAAGGCTGTCGATTTGG
ATCATTTTATTGAAACACTACCAAACGGTTACGATACTGTTCTGGATGATTCAGTGAGCCTCTCAGTGGGACAAAAGCAA
TTATTGACAATTGCACGGGCTCTAATTAGAAACGCTCCTATGTTGATTTTGGATGAAGCAACTAGTTCAGTTGATACTAG
AACTGAAGAACAGATTCAAAAGGCAATGGATGTTTTGATGAAGGGCAGAACATCATTTGTCATTGCGCATCGACTTTCAA
CTATTAAGAATGCTGATTTGATCTTAGTAGTTAAAGATGGAGAGATTATTGAACGAGGAACTCATAAAGAGTTGATGGCA
CAGAATGGTTTCTACACAAATATGTACAATAGTCAATTTACTAAAGAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(355-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

61.29

96.875

0.594

Multiple sequence alignment