Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACI6PB_RS11260 Genome accession   NZ_OY724131
Coordinates   2276522..2278288 (-) Length   588 a.a.
NCBI ID   WP_404327436.1    Uniprot ID   -
Organism   Companilactobacillus paralimentarius strain R19092     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271522..2283288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6PB_RS11245 (CPR19092_LGOLGGFK_02257) - 2271783..2272514 (-) 732 WP_056955810.1 GntR family transcriptional regulator -
  ACI6PB_RS11250 (CPR19092_LGOLGGFK_02258) - 2272577..2274226 (-) 1650 WP_081784508.1 alpha,alpha-phosphotrehalase -
  ACI6PB_RS11255 (CPR19092_LGOLGGFK_02259) rcrQ 2274795..2276525 (-) 1731 WP_309510700.1 ABC transporter ATP-binding protein Regulator
  ACI6PB_RS11260 (CPR19092_LGOLGGFK_02260) rcrP 2276522..2278288 (-) 1767 WP_404327436.1 ABC transporter ATP-binding protein Regulator
  ACI6PB_RS11265 (CPR19092_LGOLGGFK_02261) - 2278334..2278798 (-) 465 WP_158136974.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI6PB_RS11270 (CPR19092_LGOLGGFK_02262) - 2279407..2280090 (-) 684 WP_056955811.1 GTP pyrophosphokinase family protein -
  ACI6PB_RS11275 (CPR19092_LGOLGGFK_02263) - 2280164..2281600 (-) 1437 WP_056955812.1 MFS transporter -
  ACI6PB_RS11280 (CPR19092_LGOLGGFK_02264) - 2281669..2282199 (+) 531 WP_025085147.1 PadR family transcriptional regulator -
  ACI6PB_RS11285 (CPR19092_LGOLGGFK_02265) - 2282334..2282912 (-) 579 WP_025085148.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65343.67 Da        Isoelectric Point: 9.2780

>NTDB_id=1160317 ACI6PB_RS11260 WP_404327436.1 2276522..2278288(-) (rcrP) [Companilactobacillus paralimentarius strain R19092]
MIKLFKKINKKEYSMIFISLIFIVLQVGLELEIPSYMSTITERLEKQGTTINQILQPGMMMILLSIFSVIASIIVGYLAA
HVAAGFTARLRSQIFNQVMDYSTQDIKKFSVSSLLTRSTNDLTQLQQFIAMGLQVIIKAPITAIWAITKIANKGWQWTTA
TAVAVIVLIVMLTFILGMVQPKFKMVQSLTDRLNLVTRENLSGIRVVHAYNAEDYQNDKFNQANKDLTDTNLFANRVLAL
MNPGMSFISSTLTLSVYAIGAIIINQATASATRLTLFSNMIVFSSYAMQVILGFLLLSIIFILLPRVTVSVSRINQVLDV
KPSVVSEKETTEDVEQTGTIEFKDVSFRYPHAEADAIHNLSFAAQQGQTIAIIGSTGSGKSTVMNLIPRLYDVTQGQVLV
DGVDVKNYAIEDLNNRLGYIPQKAVLFSGSIRSNLDFGQTDITAKKSDQQLNQALEIAQSRDFVDQKRDQLDSKVAQHGD
NFSGGQKQRLAVARAIARKPEILLFDDSFSALDYETDKKLRKALKEKAAKTTKVIIAQRISTIMDADQIIVLDNGNIAGQ
GTHHELLKNNQVYQEIAYSQLSKEELAE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1160317 ACI6PB_RS11260 WP_404327436.1 2276522..2278288(-) (rcrP) [Companilactobacillus paralimentarius strain R19092]
ATGATAAAACTATTTAAAAAAATCAATAAAAAAGAATATTCAATGATTTTTATTAGTTTGATTTTTATCGTATTGCAAGT
TGGCTTGGAGCTGGAAATTCCTAGTTATATGTCGACTATTACGGAAAGACTGGAAAAGCAAGGAACGACGATCAATCAGA
TTTTACAGCCAGGAATGATGATGATTCTCTTATCAATTTTTAGTGTCATTGCTTCAATCATCGTCGGTTATTTGGCAGCT
CATGTGGCGGCAGGATTTACAGCTCGTTTGAGAAGCCAAATTTTCAATCAGGTTATGGATTACTCGACACAAGATATTAA
GAAATTTTCTGTTTCTAGTTTGTTGACACGTTCGACAAACGATTTGACGCAACTACAACAATTTATTGCCATGGGCTTAC
AGGTTATTATTAAAGCTCCAATTACAGCCATTTGGGCGATCACGAAGATTGCTAATAAAGGTTGGCAATGGACGACTGCC
ACAGCCGTAGCCGTTATTGTTTTGATCGTGATGTTAACGTTCATTTTGGGTATGGTTCAACCTAAATTTAAAATGGTTCA
GAGTTTAACTGATCGTTTGAATTTAGTTACTAGAGAAAATTTATCAGGTATCAGAGTCGTTCATGCTTACAACGCCGAAG
ATTACCAAAATGATAAATTCAATCAAGCTAATAAAGATTTAACTGATACCAACTTGTTTGCTAACCGAGTATTGGCTTTG
ATGAATCCCGGAATGAGTTTCATTTCCAGTACCCTAACACTTTCAGTTTATGCGATCGGTGCCATCATAATTAATCAAGC
AACCGCTAGTGCCACAAGATTGACATTGTTCAGTAATATGATTGTTTTCTCATCATATGCCATGCAAGTTATCTTAGGAT
TCTTGTTACTATCAATTATTTTCATTCTTTTACCACGTGTGACAGTTTCAGTATCCAGAATCAATCAAGTCCTAGACGTA
AAACCATCCGTTGTTAGTGAAAAGGAAACAACTGAAGATGTTGAACAGACAGGAACCATAGAATTTAAAGATGTTAGTTT
TAGATATCCACATGCCGAAGCTGATGCGATTCACAATTTAAGCTTTGCGGCACAACAAGGACAAACAATTGCCATTATTG
GATCAACTGGTAGTGGTAAATCGACTGTTATGAATTTGATTCCTAGATTGTATGATGTTACTCAAGGACAAGTCTTGGTT
GATGGCGTAGATGTTAAAAATTATGCTATCGAAGATTTGAACAATCGTTTAGGGTATATTCCACAAAAAGCTGTTCTATT
TAGTGGTTCAATTCGTTCAAACCTTGATTTTGGACAAACCGATATTACTGCTAAAAAATCAGATCAACAGCTCAATCAAG
CTTTAGAGATTGCGCAATCACGTGATTTCGTCGATCAAAAACGAGATCAGCTTGATAGCAAGGTTGCACAACATGGTGAC
AACTTCTCCGGTGGTCAGAAACAACGTTTGGCTGTTGCTCGTGCTATTGCTAGAAAACCAGAAATTTTGCTTTTCGACGA
TTCCTTCTCGGCCTTAGATTATGAGACTGATAAGAAATTACGTAAGGCTTTAAAAGAAAAGGCTGCAAAAACAACAAAAG
TTATTATTGCTCAAAGAATCAGTACCATTATGGATGCCGACCAAATTATTGTGCTTGATAACGGAAACATTGCTGGACAA
GGGACACATCATGAATTACTTAAGAATAATCAGGTTTATCAAGAGATTGCCTATTCACAATTGTCAAAGGAGGAATTAGC
TGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-508)

ABC transporter transmembrane region (ABC_membrane)

(16-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.276

100

0.561

Multiple sequence alignment