Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   Q7F15_RS13500 Genome accession   NZ_OY569118
Coordinates   2731227..2733485 (-) Length   752 a.a.
NCBI ID   WP_171565418.1    Uniprot ID   -
Organism   Brevibacillus aydinogluensis strain 4475 isolate 4475     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2726227..2738485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7F15_RS13475 (BSPP4475_13575) - 2727996..2729060 (-) 1065 WP_171565414.1 AI-2E family transporter -
  Q7F15_RS13480 (BSPP4475_13580) - 2729437..2730123 (+) 687 WP_171565415.1 TerC family protein -
  Q7F15_RS13485 (BSPP4475_13585) - 2730202..2730390 (-) 189 WP_171565416.1 hypothetical protein -
  Q7F15_RS13490 (BSPP4475_13590) - 2730426..2730632 (-) 207 WP_171565516.1 hypothetical protein -
  Q7F15_RS13495 (BSPP4475_13595) - 2730652..2731149 (-) 498 WP_171565417.1 PRC-barrel domain-containing protein -
  Q7F15_RS13500 (BSPP4475_13600) recD2 2731227..2733485 (-) 2259 WP_171565418.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q7F15_RS13505 (BSPP4475_13605) - 2733721..2734854 (-) 1134 WP_304414462.1 cysteine desulfurase family protein -
  Q7F15_RS13510 (BSPP4475_13610) - 2734891..2735310 (-) 420 WP_171565420.1 Rrf2 family transcriptional regulator -
  Q7F15_RS13515 (BSPP4475_13615) - 2735421..2735594 (+) 174 WP_171565421.1 hypothetical protein -
  Q7F15_RS13520 (BSPP4475_13620) - 2735626..2736954 (-) 1329 WP_171565422.1 AAA family ATPase -
  Q7F15_RS13525 (BSPP4475_13625) - 2737104..2738147 (-) 1044 WP_171565423.1 oxidoreductase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 85076.28 Da        Isoelectric Point: 5.2183

>NTDB_id=1160278 Q7F15_RS13500 WP_171565418.1 2731227..2733485(-) (recD2) [Brevibacillus aydinogluensis strain 4475 isolate 4475]
MSQQTLSLFAEPYIRGYVAQEIFYNEETWYGVIRLTVEETTEPVKDAEVVVVGNFPRPHPEELYTFYGEWKTHPKFGQQY
AVNRYERETPKTRAGVERYLASGLFQGIGKTMAKRIVQHLGVEALTIIAEQPERLVEVPGISETRAKQIYESVMEHRSLE
RAMVFLYEFGIGVQLALRIYQTYKLETMTVLTEQPYRLIEDVAGIGFKRADEIARATGIAASSEERVKAAALYVLQEACY
SEGHVFLPADELCEKTLRLLDECGGHRFQPEEIALAVESLFVESKVVWDEDRVYLPSLFFAEIGLAKRLRYFAERDEFGA
FPASEFYRALGAVEEELGITYAQTQRDAIEQAIKSGLMLLTGGPGTGKTTVIRGICRVFAQLHGISLDLKTYDEENPFPI
LLVAPTGRAAKRMSETTGLPAMTIHRLLGWKGDSFQHDAEHPIRGRLLIVDEMSMVDVWLANQLFRAVPDEMQVIMVGDP
DQLPSVGPGNVLQDMIRSGLLPRVQLSEIYRQAQESSIIRLAHDVRKGLVPSDLLATTPDRRFFTSSPQDVVEAVKQICA
GAVKKGYTAKDVQVLAPMYKGNAGVNRLNEELQQLFNPKTEQKREVTFGDTVFRTGDKVLQLVNNAEEQVFNGDMGEIVA
IFYPNENAENTEMMVVSFDGREVVYKRSEYHQLTLAYCCSVHKSQGSEFPIVVMPFVRSYHRMLRRKLVYTGITRSKSFL
IMCGEPDAFRLAVETDEEGVRYSYLEERLKQG

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1160278 Q7F15_RS13500 WP_171565418.1 2731227..2733485(-) (recD2) [Brevibacillus aydinogluensis strain 4475 isolate 4475]
GTGTCACAGCAGACACTTTCCTTGTTTGCCGAACCTTACATACGCGGCTATGTCGCGCAAGAAATTTTTTACAATGAAGA
AACGTGGTACGGTGTCATTCGTCTAACAGTGGAGGAGACTACAGAACCGGTGAAGGATGCCGAGGTCGTGGTCGTCGGGA
ACTTCCCCCGGCCGCATCCGGAGGAGCTGTACACGTTTTACGGTGAGTGGAAGACGCATCCAAAGTTTGGGCAGCAGTAC
GCAGTCAACAGGTATGAACGGGAAACGCCCAAGACCCGGGCAGGAGTGGAGCGCTATCTGGCCAGCGGACTGTTTCAAGG
CATCGGCAAGACGATGGCGAAACGCATCGTGCAGCATCTGGGCGTAGAGGCGCTCACAATCATCGCCGAGCAGCCGGAGC
GGCTCGTGGAGGTGCCGGGTATCTCGGAGACGCGCGCCAAGCAGATCTACGAGTCGGTGATGGAACACCGCTCCCTGGAG
AGAGCGATGGTGTTTCTCTACGAGTTTGGCATCGGCGTCCAGTTGGCGCTGCGGATTTATCAGACGTACAAGCTGGAGAC
GATGACTGTCCTGACGGAACAGCCGTATCGGCTGATCGAGGATGTCGCGGGCATCGGGTTCAAGCGGGCGGACGAAATCG
CCCGGGCTACGGGAATTGCCGCTTCCTCGGAGGAAAGGGTCAAGGCGGCAGCCCTGTACGTTTTGCAGGAAGCCTGCTAC
TCCGAAGGACACGTGTTTCTGCCGGCGGACGAGCTGTGTGAAAAAACGCTGCGCCTGTTGGACGAGTGCGGGGGACACCG
CTTTCAGCCGGAGGAGATTGCGCTTGCCGTGGAATCGCTTTTTGTCGAGAGCAAAGTGGTCTGGGACGAAGACCGGGTCT
ATCTGCCTTCGCTGTTTTTTGCGGAAATTGGGCTGGCCAAGCGGCTGCGCTACTTTGCCGAACGGGACGAGTTCGGCGCC
TTTCCCGCTTCGGAGTTTTACCGGGCGCTGGGCGCAGTGGAAGAAGAGCTGGGCATCACGTACGCCCAAACGCAGCGGGA
TGCGATCGAGCAGGCGATCAAATCCGGACTGATGCTCTTGACCGGCGGTCCCGGCACGGGGAAAACGACGGTGATTCGCG
GGATCTGTCGCGTGTTTGCCCAACTGCACGGCATTTCGCTAGACCTGAAGACCTACGACGAAGAAAATCCCTTCCCCATC
CTGCTGGTCGCTCCCACCGGTCGGGCAGCCAAACGCATGTCGGAGACAACCGGTCTGCCAGCGATGACCATTCACCGCCT
CCTCGGTTGGAAAGGGGACAGCTTTCAGCACGACGCGGAGCATCCGATCCGGGGACGGCTGTTGATCGTCGACGAGATGT
CGATGGTGGACGTCTGGCTGGCCAATCAGCTGTTTCGCGCCGTGCCGGACGAGATGCAGGTGATTATGGTGGGCGACCCG
GATCAGCTGCCGTCGGTCGGCCCCGGCAACGTGCTGCAGGACATGATCCGCTCGGGTCTGTTGCCGCGCGTACAGCTCAG
CGAGATTTACCGGCAGGCGCAGGAGTCCTCGATCATCCGGCTGGCTCACGATGTCCGCAAGGGATTGGTCCCGTCCGATT
TGTTGGCCACGACGCCTGACCGTCGATTTTTCACAAGTTCGCCACAAGATGTGGTGGAAGCGGTGAAACAAATCTGCGCC
GGAGCCGTAAAGAAAGGGTATACGGCCAAAGATGTACAAGTCCTCGCTCCCATGTACAAGGGAAATGCCGGAGTAAACCG
GCTGAACGAAGAGCTGCAGCAACTGTTCAATCCCAAGACTGAACAGAAGCGGGAGGTGACGTTTGGCGACACCGTCTTCC
GCACCGGGGACAAGGTGCTGCAGTTGGTCAACAACGCCGAGGAACAGGTGTTCAACGGCGACATGGGAGAAATTGTCGCC
ATTTTTTACCCGAATGAAAACGCAGAGAACACCGAGATGATGGTCGTTTCCTTTGACGGCCGGGAAGTGGTGTACAAGCG
TTCGGAGTATCACCAGCTCACACTGGCCTACTGCTGCTCCGTGCACAAGTCGCAGGGCAGCGAGTTTCCCATCGTGGTCA
TGCCGTTTGTCCGCAGCTACCACCGCATGCTGCGGCGCAAGCTGGTGTATACGGGAATTACCCGCAGCAAGTCGTTTTTG
ATCATGTGCGGGGAGCCGGATGCGTTTCGCCTCGCGGTAGAGACCGACGAAGAGGGCGTGCGCTACAGCTATTTGGAAGA
GCGATTGAAGCAAGGGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-722)

Helix-hairpin-helix domain (HHH_5)

(106-152)

AAA domain (AAA_30)

(341-533)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.401

99.468

0.501

Multiple sequence alignment