Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Q4I17_RS06385 Genome accession   NZ_OX636702
Coordinates   1342752..1344563 (-) Length   603 a.a.
NCBI ID   WP_302275928.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii isolate DSM32379     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337752..1349563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4I17_RS06360 - 1338250..1339095 (+) 846 WP_302275925.1 MurR/RpiR family transcriptional regulator -
  Q4I17_RS06365 spoIVA 1339208..1340704 (+) 1497 WP_097792082.1 stage IV sporulation protein A -
  Q4I17_RS06370 - 1340714..1341562 (-) 849 WP_302275926.1 sugar nucleotide-binding protein -
  Q4I17_RS06375 - 1341568..1341879 (-) 312 WP_118552850.1 AzlD domain-containing protein -
  Q4I17_RS06380 - 1341876..1342619 (-) 744 WP_223383665.1 AzlC family ABC transporter permease -
  Q4I17_RS06385 rcrQ 1342752..1344563 (-) 1812 WP_302275928.1 ABC transporter ATP-binding protein Regulator
  Q4I17_RS06390 - 1344565..1346898 (-) 2334 WP_302275929.1 ABC transporter ATP-binding protein -
  Q4I17_RS06395 - 1346891..1347391 (-) 501 WP_302275931.1 MarR family winged helix-turn-helix transcriptional regulator -
  Q4I17_RS06400 - 1347537..1348049 (-) 513 WP_097792340.1 DUF2812 domain-containing protein -
  Q4I17_RS06405 - 1348046..1348363 (-) 318 WP_302275932.1 PadR family transcriptional regulator -
  Q4I17_RS06410 - 1348805..1349134 (-) 330 WP_097792338.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66522.92 Da        Isoelectric Point: 6.1962

>NTDB_id=1160007 Q4I17_RS06385 WP_302275928.1 1342752..1344563(-) (rcrQ) [Faecalibacterium prausnitzii isolate DSM32379]
MPRPGRQTTERAKDFKGTLLQLLKTLGAYKISLIVVIVFAILSTIFNIAGPKILAKATTALATGWIARLRGVGSIDFGYI
GKILLILLAMYLCSAAFSFIQGWLMTGLSQKVCYDFRRQISEKIDRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLLMMLSISPRMTLIALLILPVSLALVLLVVKFSQKYFKAQQATLGVVNGQVEEVYSGHNVIKAFNREA
AVLADFNTANDKLFESAWKSQFLSGLMQPIMNFVGNLGYVAVAIVGSVFAANGVITIGDIQAFIQYVKNFTQPIQQLAQV
SNMLQSMAAAAERVFEFLNEPEEAQLADPARRADSACIDGQVTFDHVRFGYVPEKTIIHDFSCTVNPGEKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNRILILDEATSSVDTRTEQRIQTAMDNLMRGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEKGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1160007 Q4I17_RS06385 WP_302275928.1 1342752..1344563(-) (rcrQ) [Faecalibacterium prausnitzii isolate DSM32379]
ATGCCGAGACCCGGACGCCAGACGACGGAACGCGCCAAGGATTTCAAGGGCACGCTGCTGCAGCTGCTCAAGACCCTGGG
CGCATATAAGATCTCCCTCATCGTCGTCATCGTTTTCGCCATCCTCTCCACCATCTTCAACATCGCAGGCCCGAAGATCC
TGGCCAAGGCCACCACGGCCCTTGCCACCGGCTGGATCGCCAGACTGCGCGGCGTTGGTAGCATCGACTTTGGCTACATC
GGCAAAATCCTGCTCATCCTGCTGGCCATGTACCTCTGCTCGGCCGCATTCAGCTTCATTCAGGGCTGGCTGATGACCGG
CCTTTCGCAGAAGGTGTGCTACGACTTCCGCCGCCAGATCAGCGAGAAGATCGACCGCCTGCCCCTCGCCTACTTTGAAA
AGCGCACCGTCGGCGAGGTGCTCTCCCGCATCACCAACGACGTCGATACTCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGTGTGCTCCTCATGATGCTTTCCATCAGCCCCAGAATGACCCTCATTGC
CCTGCTCATCCTGCCCGTTTCGCTGGCGCTGGTGCTGCTGGTGGTCAAATTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CCACTCTGGGCGTCGTGAACGGCCAGGTGGAAGAGGTCTACTCCGGCCACAACGTCATCAAGGCATTCAACCGCGAAGCC
GCTGTGCTGGCCGACTTTAACACCGCGAACGACAAGCTGTTCGAATCCGCCTGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GCAGCCCATCATGAACTTTGTGGGCAATCTGGGCTATGTAGCCGTGGCCATCGTCGGCAGCGTGTTTGCCGCCAACGGCG
TCATCACCATCGGCGACATTCAGGCGTTCATCCAGTATGTCAAGAACTTCACCCAGCCCATCCAGCAGCTCGCGCAGGTG
TCGAACATGCTGCAGAGCATGGCCGCTGCGGCGGAGCGCGTCTTCGAGTTCCTGAATGAGCCGGAAGAAGCGCAGCTCGC
CGACCCGGCCCGCCGGGCAGACTCCGCCTGCATCGACGGTCAGGTCACCTTTGACCACGTCCGGTTCGGCTATGTGCCCG
AAAAGACCATCATCCACGATTTCAGCTGCACCGTGAACCCCGGCGAGAAGGTCGCCATCGTAGGCCCCACCGGCGCTGGC
AAGACCACCATGGTCAAGCTGCTGATGCGGTTCTACGATGTGGATTCCGGTTCCATCACCCTGAACGGCCACGATGTGCG
CGACTTTGACCGCAGTGCTCTGCGCGAGGGCTTCGGCATGGTGCTGCAGGACACCTGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGGTACGGCCGCCTCGATGCCACCGACGAAGAAGTCATCGCCGCAGCCAAGGCTGCCAACGCAGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGACGCCTCCAACGTCAGTCAGGGCCAGAAGCAGCTGCT
GACCATTGCCCGCGCCATCCTGGCCGACAACCGCATCCTGATTTTGGATGAGGCCACCAGCAGCGTGGATACCCGCACCG
AACAGCGCATCCAGACCGCAATGGACAACCTGATGCGCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTGTCCACCATC
CGGGACGCCGACCTCATCCTTGTGATGCGGGACGGCGACATCGTCGAGCAGGGCACCCATGACCAGCTCATCGAAAAGGG
CGGCTTCTACGCAGACCTGTACAACAGCCAGTTCGAAGACGTTGTGGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(33-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.596

97.347

0.493

Multiple sequence alignment