Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QQM10_RS12685 Genome accession   NZ_OX596084
Coordinates   2725310..2725963 (-) Length   217 a.a.
NCBI ID   WP_058877503.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain EAV_NVH72 isolate EAV_NVH72     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2720310..2730963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM10_RS12655 (EAVNVH72_02539) - 2720525..2720944 (-) 420 WP_024564901.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  QQM10_RS12660 (EAVNVH72_02540) - 2720952..2721431 (-) 480 WP_024564900.1 heme-binding domain-containing protein -
  QQM10_RS12665 (EAVNVH72_02541) der 2721659..2722969 (+) 1311 WP_009087927.1 ribosome biogenesis GTPase Der -
  QQM10_RS12670 (EAVNVH72_02542) - 2723025..2723669 (+) 645 WP_058877501.1 4'-phosphopantetheinyl transferase superfamily protein -
  QQM10_RS12675 (EAVNVH72_02543) - 2723690..2724544 (-) 855 WP_058877502.1 phospholipase -
  QQM10_RS12680 (EAVNVH72_02544) upp 2724654..2725304 (+) 651 WP_009087924.1 uracil phosphoribosyltransferase -
  QQM10_RS12685 (EAVNVH72_02545) comF 2725310..2725963 (-) 654 WP_058877503.1 double zinc ribbon domain-containing protein Machinery gene
  QQM10_RS12690 (EAVNVH72_02546) - 2725985..2727490 (-) 1506 WP_058877504.1 XRE family transcriptional regulator -
  QQM10_RS12695 (EAVNVH72_02547) aceB 2727569..2729134 (+) 1566 WP_058877505.1 malate synthase A -
  QQM10_RS12700 (EAVNVH72_02548) aceA 2729173..2730447 (+) 1275 WP_009087914.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25318.29 Da        Isoelectric Point: 8.4771

>NTDB_id=1159999 QQM10_RS12685 WP_058877503.1 2725310..2725963(-) (comF) [Elizabethkingia anophelis strain EAV_NVH72 isolate EAV_NVH72]
MNFFTDILFPNRCLQCNHIIDGKDIICEECYDQVDFTHWESLQETLLQQKLSSLFPVENSYALMNFEKDGLSRKLIHNLK
YANREIVGDTLARWTAEKINLKSKPDILINIPLHAKKLKKRGYNQLHRFTETLSKEWDIPYNHHYLKRTAYSTAQARKKL
KQRKENINIFIVPNPLENIHFLLIDDVCTTGNTLASCAWEILKTPGNKLSVLVMAID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1159999 QQM10_RS12685 WP_058877503.1 2725310..2725963(-) (comF) [Elizabethkingia anophelis strain EAV_NVH72 isolate EAV_NVH72]
ATGAATTTCTTTACAGATATATTATTTCCAAACCGTTGCCTTCAATGCAATCACATTATTGACGGAAAAGATATTATTTG
TGAAGAATGTTATGATCAGGTAGATTTTACCCATTGGGAATCATTACAGGAGACACTATTGCAACAGAAATTATCTTCTC
TTTTCCCTGTTGAAAATTCTTATGCTTTGATGAATTTTGAGAAAGATGGCCTTAGCAGAAAATTAATCCACAATCTCAAA
TATGCTAATCGCGAGATTGTAGGAGATACATTGGCCCGATGGACAGCGGAAAAAATAAATCTAAAATCAAAACCCGATAT
ACTGATTAATATTCCGTTACATGCCAAGAAACTAAAAAAACGGGGATATAATCAGCTGCATCGCTTTACAGAAACATTAT
CAAAGGAATGGGATATTCCATATAATCATCATTATTTAAAAAGGACAGCTTACAGCACTGCTCAAGCCAGAAAAAAATTG
AAACAAAGAAAGGAGAACATCAATATATTCATAGTTCCTAATCCCCTTGAAAACATTCATTTTCTTCTTATTGATGATGT
ATGTACTACAGGAAATACTTTAGCTTCGTGTGCATGGGAGATACTAAAAACGCCCGGCAATAAGCTGAGCGTTTTAGTTA
TGGCAATTGATTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(5-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.837

99.078

0.484

Multiple sequence alignment