Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QQM16_RS12810 Genome accession   NZ_OX596082
Coordinates   2718376..2719029 (-) Length   217 a.a.
NCBI ID   WP_154492359.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain EAV_NNN508 isolate EAV_NNN508     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2713376..2724029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM16_RS12780 (EAVNNN508_02572) - 2713457..2714116 (-) 660 WP_021348851.1 DUF4290 domain-containing protein -
  QQM16_RS12785 (EAVNNN508_02573) - 2714192..2714611 (-) 420 WP_061890183.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  QQM16_RS12790 (EAVNNN508_02574) - 2714619..2715098 (-) 480 WP_034845719.1 heme-binding domain-containing protein -
  QQM16_RS12795 (EAVNNN508_02575) der 2715326..2716636 (+) 1311 WP_009087927.1 ribosome biogenesis GTPase Der -
  QQM16_RS12800 (EAVNNN508_02576) - 2716756..2717610 (-) 855 WP_034845721.1 phospholipase -
  QQM16_RS12805 (EAVNNN508_02577) upp 2717720..2718370 (+) 651 WP_009087924.1 uracil phosphoribosyltransferase -
  QQM16_RS12810 (EAVNNN508_02578) comF 2718376..2719029 (-) 654 WP_154492359.1 double zinc ribbon domain-containing protein Machinery gene
  QQM16_RS12815 (EAVNNN508_02579) - 2719051..2720556 (-) 1506 WP_154492361.1 XRE family transcriptional regulator -
  QQM16_RS12820 (EAVNNN508_02580) aceB 2720636..2722201 (+) 1566 WP_154492363.1 malate synthase A -
  QQM16_RS12825 (EAVNNN508_02581) aceA 2722240..2723514 (+) 1275 WP_087093975.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25203.31 Da        Isoelectric Point: 8.9780

>NTDB_id=1159972 QQM16_RS12810 WP_154492359.1 2718376..2719029(-) (comF) [Elizabethkingia anophelis strain EAV_NNN508 isolate EAV_NNN508]
MNFFTDILFPNRCLQCNHIIDGKDIICEGCYDQVDFTHWESLPKTLLQQKLCSLFPVENSYALMNFEKDGLSRKLIHNLK
YANREIVGDTLARWTAEKINLKSKPDILINIPLHAKKLKKRGYNQLHRFTETLSKEWDIPYNHHYLKRTAYSTAQARKKL
KQRKENINIFIVPNPLENIHFLLIDDVCTTGSTLASCAWEILKTPGNKLSVLVMAID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1159972 QQM16_RS12810 WP_154492359.1 2718376..2719029(-) (comF) [Elizabethkingia anophelis strain EAV_NNN508 isolate EAV_NNN508]
ATGAATTTCTTTACAGATATATTATTTCCAAACCGTTGCCTTCAATGCAATCACATTATTGACGGAAAAGATATTATTTG
TGAAGGATGTTATGATCAGGTAGATTTTACCCATTGGGAATCATTACCGAAGACACTATTGCAACAGAAATTATGTTCTC
TTTTCCCTGTTGAGAATTCTTATGCTTTGATGAATTTTGAGAAAGATGGCCTTAGCAGAAAATTAATCCACAATCTCAAA
TATGCTAATCGCGAGATTGTAGGAGATACATTGGCCCGATGGACAGCGGAAAAAATAAATCTAAAATCAAAACCCGATAT
ACTGATTAATATTCCGTTACATGCCAAGAAACTAAAAAAACGGGGATATAATCAGCTGCATCGCTTTACAGAAACATTAT
CAAAGGAATGGGATATTCCATATAATCATCATTATTTAAAAAGGACAGCTTACAGCACTGCTCAAGCCAGAAAAAAATTG
AAACAAAGAAAGGAGAACATCAATATATTCATAGTTCCTAATCCCCTTGAAAACATTCATTTTCTTCTTATTGATGATGT
ATGTACTACAGGAAGTACTTTAGCTTCGTGTGCATGGGAGATACTAAAAACGCCCGGCAATAAGCTGAGCGTTTTAGTTA
TGGCAATTGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.837

99.078

0.484

Multiple sequence alignment