Detailed information NTG1159392

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: QOR54_RS04880
• Genome accession: NZ_OX460968
• Coordinates: 899856..900713 (+)
• Length: 285 a.a.
• NCBI ID: WP_000163020.1
• Uniprot ID: A0AAV3JMI0
• Organism: Streptococcus agalactiae isolate MRI Z2-342
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	900817..901950	899856..900713	flank	104

Gene organization within MGE regions

Location: 899856..901950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOR54_RS04880	endA	899856..900713 (+)	858	WP_000163020.1	DNA/RNA non-specific endonuclease	Machinery gene
QOR54_RS04885	-	900817..901950 (+)	1134	WP_000564846.1	ISAs1-like element IS1548 family transposase	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31352.34 Da
• Isoelectric Point: 10.4835

>NTDB_id=1159392 QOR54_RS04880 WP_000163020.1 899856..900713(+) (endA) [Streptococcus agalactiae isolate MRI Z2-342]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide

• Length: 858 bp

>NTDB_id=1159392 QOR54_RS04880 WP_000163020.1 899856..900713(+) (endA) [Streptococcus agalactiae isolate MRI Z2-342]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACTCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (87-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	66.379	81.404	0.54
endA	Streptococcus pneumoniae D39	66.379	81.404	0.54
endA	Streptococcus pneumoniae R6	66.379	81.404	0.54
endA	Streptococcus pneumoniae TIGR4	66.379	81.404	0.54