Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QOR58_RS01140 Genome accession   NZ_OX460941
Coordinates   192091..193065 (+) Length   324 a.a.
NCBI ID   WP_001008574.1    Uniprot ID   A0AAV3JGK6
Organism   Streptococcus agalactiae isolate MRI Z2-304     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187091..198065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR58_RS01100 - 187781..188146 (+) 366 WP_000285373.1 DUF1033 family protein -
  QOR58_RS01105 comYA 188319..189290 (+) 972 WP_000250805.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR58_RS01110 comYB 189184..190227 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR58_RS01115 comGC/cglC 190224..190553 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  QOR58_RS01120 comYD 190528..190941 (+) 414 WP_000244261.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR58_RS01125 comGE 190913..191212 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE -
  QOR58_RS01130 comGF 191166..191627 (+) 462 WP_001874812.1 competence type IV pilus minor pilin ComGF -
  QOR58_RS01135 comGG 191605..191976 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  QOR58_RS01140 comYH 192091..193065 (+) 975 WP_001008574.1 N-6 DNA methylase Machinery gene
  QOR58_RS01145 - 193097..194290 (+) 1194 WP_000047534.1 acetate kinase -
  QOR58_RS01150 - 194442..194648 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QOR58_RS01155 - 194707..194844 (+) 138 WP_001865900.1 hypothetical protein -
  QOR58_RS01160 - 194885..195340 (+) 456 WP_000905673.1 hypothetical protein -
  QOR58_RS01165 - 195409..196074 (+) 666 WP_000008113.1 type II CAAX endopeptidase family protein -
  QOR58_RS01170 proC 196095..196865 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  QOR58_RS01175 pepA 196935..198002 (-) 1068 WP_001281321.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37046.02 Da        Isoelectric Point: 4.5224

>NTDB_id=1159123 QOR58_RS01140 WP_001008574.1 192091..193065(+) (comYH) [Streptococcus agalactiae isolate MRI Z2-304]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK

Nucleotide


Download         Length: 975 bp        

>NTDB_id=1159123 QOR58_RS01140 WP_001008574.1 192091..193065(+) (comYH) [Streptococcus agalactiae isolate MRI Z2-304]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment