Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QOR46_RS01140 Genome accession   NZ_OX460934
Coordinates   191965..192939 (+) Length   324 a.a.
NCBI ID   WP_001008568.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-335     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186965..197939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR46_RS01100 - 187656..188021 (+) 366 WP_000285373.1 DUF1033 family protein -
  QOR46_RS01105 comYA 188193..189164 (+) 972 WP_000250799.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR46_RS01110 comYB 189058..190101 (+) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR46_RS01115 comGC/cglC 190098..190427 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  QOR46_RS01120 comYD 190402..190815 (+) 414 WP_017646959.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR46_RS01125 comGE 190787..191086 (+) 300 WP_025195478.1 competence type IV pilus minor pilin ComGE -
  QOR46_RS01130 comGF 191040..191501 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  QOR46_RS01135 comGG 191479..191850 (+) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG -
  QOR46_RS01140 comYH 191965..192939 (+) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  QOR46_RS01145 - 192971..194164 (+) 1194 WP_000047537.1 acetate kinase -
  QOR46_RS01150 - 194316..194522 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QOR46_RS01155 - 194581..194718 (+) 138 WP_079263416.1 hypothetical protein -
  QOR46_RS01160 - 194821..195213 (+) 393 WP_001265365.1 hypothetical protein -
  QOR46_RS01165 - 195282..195947 (+) 666 WP_000008107.1 type II CAAX endopeptidase family protein -
  QOR46_RS01170 proC 195968..196738 (-) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -
  QOR46_RS01175 pepA 196808..197875 (-) 1068 WP_001281326.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37200.19 Da        Isoelectric Point: 4.4491

>NTDB_id=1158914 QOR46_RS01140 WP_001008568.1 191965..192939(+) (comYH) [Streptococcus agalactiae isolate MRI Z2-335]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWRRENSHYSK
NMIE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=1158914 QOR46_RS01140 WP_001008568.1 191965..192939(+) (comYH) [Streptococcus agalactiae isolate MRI Z2-335]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAATCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTGTAGT
GTCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGAAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment