Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QOR56_RS06215 Genome accession   NZ_OX460906
Coordinates   1233073..1233930 (-) Length   285 a.a.
NCBI ID   WP_000163017.1    Uniprot ID   A0AB38VM19
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1228073..1238930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS06200 pheT 1228679..1231084 (-) 2406 WP_283572147.1 phenylalanine--tRNA ligase subunit beta -
  QOR56_RS06205 - 1231138..1231659 (-) 522 WP_000078401.1 GNAT family N-acetyltransferase -
  QOR56_RS06210 pheS 1231742..1232782 (-) 1041 WP_283572148.1 phenylalanine--tRNA ligase subunit alpha -
  QOR56_RS06215 endA 1233073..1233930 (-) 858 WP_000163017.1 DNA/RNA non-specific endonuclease Machinery gene
  QOR56_RS06220 - 1234005..1234196 (-) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  QOR56_RS06225 murA 1234198..1235469 (-) 1272 WP_283572149.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QOR56_RS06230 - 1235532..1235762 (-) 231 WP_000602602.1 DUF1146 family protein -
  QOR56_RS06235 - 1235827..1236240 (-) 414 WP_000068053.1 F0F1 ATP synthase subunit epsilon -
  QOR56_RS06240 atpD 1236253..1237659 (-) 1407 WP_230225305.1 F0F1 ATP synthase subunit beta -
  QOR56_RS06245 - 1237733..1238614 (-) 882 WP_000919083.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31366.37 Da        Isoelectric Point: 10.4835

>NTDB_id=1158747 QOR56_RS06215 WP_000163017.1 1233073..1233930(-) (endA) [Streptococcus agalactiae isolate MRI Z2-265]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNISGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=1158747 QOR56_RS06215 WP_000163017.1 1233073..1233930(-) (endA) [Streptococcus agalactiae isolate MRI Z2-265]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATATATCAGGAACTCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAGTATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGTCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.379

81.404

0.54
  endA Streptococcus pneumoniae D39

66.379

81.404

0.54
  endA Streptococcus pneumoniae R6

66.379

81.404

0.54
  endA Streptococcus pneumoniae TIGR4

66.379

81.404

0.54

Multiple sequence alignment