Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   P4E82_RS02210 Genome accession   NZ_OX442413
Coordinates   453331..453846 (+) Length   171 a.a.
NCBI ID   WP_199375548.1    Uniprot ID   A0A5T0J6L8
Organism   Campylobacter coli isolate pure strain     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448331..458846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS02185 - 448787..449125 (+) 339 WP_002777761.1 hypothetical protein -
  P4E82_RS02190 - 449134..449859 (+) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  P4E82_RS02195 dxr 449856..450932 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  P4E82_RS02200 - 450929..452323 (+) 1395 WP_072239913.1 M99 family carboxypeptidase catalytic domain-containing protein -
  P4E82_RS02205 tsaD 452320..453327 (+) 1008 WP_057044013.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  P4E82_RS02210 ctsG 453331..453846 (+) 516 WP_199375548.1 type II secretion system protein Machinery gene
  P4E82_RS02215 - 453847..455087 (+) 1241 Protein_430 DUF2920 family protein -
  P4E82_RS02220 - 455099..456922 (+) 1824 WP_318764438.1 motility associated factor glycosyltransferase family protein -
  P4E82_RS02225 - 456919..458736 (+) 1818 WP_318764439.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18789.59 Da        Isoelectric Point: 7.1362

>NTDB_id=1158363 P4E82_RS02210 WP_199375548.1 453331..453846(+) (ctsG) [Campylobacter coli isolate pure strain]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1158363 P4E82_RS02210 WP_199375548.1 453331..453846(+) (ctsG) [Campylobacter coli isolate pure strain]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGAGGAAGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0J6L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.765

99.415

0.912

Multiple sequence alignment