Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   QOR53_RS08055 Genome accession   NZ_OX437061
Coordinates   1524977..1525585 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519977..1530585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR53_RS08030 - 1520135..1520899 (+) 765 WP_002851318.1 TIGR02757 family protein -
  QOR53_RS08035 - 1520903..1521666 (+) 764 Protein_1568 TSUP family transporter -
  QOR53_RS08040 ctsF 1521659..1522840 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  QOR53_RS08045 ctsE 1522837..1524396 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  QOR53_RS08050 ctsX 1524386..1524973 (-) 588 WP_002851370.1 membrane protein Machinery gene
  QOR53_RS08055 ctsP 1524977..1525585 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QOR53_RS08060 ctsD 1525578..1526990 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QOR53_RS08065 ctsR 1526968..1527279 (-) 312 WP_015016496.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=1158282 QOR53_RS08055 WP_002851464.1 1524977..1525585(-) (ctsP) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1158282 QOR53_RS08055 WP_002851464.1 1524977..1525585(-) (ctsP) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment