Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QNH83_RS07440 Genome accession   NZ_OX437060
Coordinates   1392522..1393037 (-) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387522..1398037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH83_RS07425 - 1387624..1389441 (-) 1818 WP_021036356.1 motility associated factor glycosyltransferase family protein -
  QNH83_RS07430 - 1389438..1391261 (-) 1824 WP_054829500.1 motility associated factor glycosyltransferase family protein -
  QNH83_RS07435 - 1391271..1392522 (-) 1252 Protein_1450 DUF2920 family protein -
  QNH83_RS07440 ctsG 1392522..1393037 (-) 516 WP_002903863.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QNH83_RS07445 tsaD 1393038..1394045 (-) 1008 WP_002889944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QNH83_RS07450 - 1394042..1395436 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QNH83_RS07455 dxr 1395438..1396508 (-) 1071 WP_002871960.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QNH83_RS07460 cdsA 1396505..1397230 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  QNH83_RS07465 - 1397239..1397577 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=1158247 QNH83_RS07440 WP_002903863.1 1392522..1393037(-) (ctsG) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1158247 QNH83_RS07440 WP_002903863.1 1392522..1393037(-) (ctsG) [Campylobacter jejuni strain ST-19 isolate Campylobacter jejuni]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment