Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | KJP56_RS09100 | Genome accession | NZ_OX419652 |
| Coordinates | 1744440..1745219 (+) | Length | 259 a.a. |
| NCBI ID | WP_003220850.1 | Uniprot ID | G4NSM6 |
| Organism | Bacillus subtilis isolate NRS6131 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1706265..1752401 | 1744440..1745219 | within | 0 |
Gene organization within MGE regions
Location: 1706265..1752401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KJP56_RS08905 (NRS6131_08875) | rpe | 1707012..1707665 (+) | 654 | WP_003232058.1 | ribulose-phosphate 3-epimerase | - |
| KJP56_RS08910 (NRS6131_08880) | thiN | 1707738..1708382 (+) | 645 | WP_161985988.1 | thiamine diphosphokinase | - |
| KJP56_RS08915 (NRS6131_08885) | spoVM | 1708454..1708534 (+) | 81 | WP_003221545.1 | stage V sporulation protein SpoVM | - |
| KJP56_RS08920 (NRS6131_08890) | rpmB | 1708607..1708795 (-) | 189 | WP_003221548.1 | 50S ribosomal protein L28 | - |
| KJP56_RS08925 (NRS6131_08895) | yloU | 1709072..1709434 (+) | 363 | WP_003232054.1 | Asp23/Gls24 family envelope stress response protein | - |
| KJP56_RS08930 (NRS6131_08900) | yloV | 1709450..1711111 (+) | 1662 | WP_003245033.1 | DAK2 domain-containing protein | - |
| KJP56_RS08935 (NRS6131_08905) | sdaAB | 1711250..1711912 (+) | 663 | WP_213419703.1 | L-serine ammonia-lyase, iron-sulfur-dependent subunit beta | - |
| KJP56_RS08940 (NRS6131_08910) | sdaAA | 1711938..1712840 (+) | 903 | WP_003232049.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| KJP56_RS08945 (NRS6131_08915) | recG | 1712818..1714866 (+) | 2049 | WP_014479767.1 | ATP-dependent DNA helicase RecG | - |
| KJP56_RS08950 (NRS6131_08920) | fapR | 1714975..1715541 (+) | 567 | WP_003232044.1 | transcription factor FapR | - |
| KJP56_RS08955 (NRS6131_08925) | plsX | 1715555..1716556 (+) | 1002 | WP_003232041.1 | phosphate acyltransferase PlsX | - |
| KJP56_RS08960 (NRS6131_08930) | fabD | 1716575..1717528 (+) | 954 | WP_015383644.1 | ACP S-malonyltransferase | - |
| KJP56_RS08965 (NRS6131_08935) | fabG | 1717521..1718261 (+) | 741 | WP_003232035.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| KJP56_RS08970 (NRS6131_08940) | acpP | 1718345..1718578 (+) | 234 | WP_003154310.1 | acyl carrier protein | - |
| KJP56_RS08975 (NRS6131_08945) | rncS | 1718718..1719467 (+) | 750 | WP_003232030.1 | ribonuclease III | - |
| KJP56_RS08980 (NRS6131_08950) | smc | 1719568..1723128 (+) | 3561 | WP_124048382.1 | chromosome segregation protein SMC | - |
| KJP56_RS08985 (NRS6131_08955) | ftsY | 1723148..1724137 (+) | 990 | WP_003232026.1 | signal recognition particle-docking protein FtsY | - |
| KJP56_RS08995 (NRS6131_08970) | ylqB | 1725487..1725972 (-) | 486 | WP_003245834.1 | Ig-like domain-containing protein | - |
| KJP56_RS09000 (NRS6131_08975) | ylxM | 1726149..1726481 (+) | 333 | WP_021479302.1 | putative DNA-binding protein | - |
| KJP56_RS09005 (NRS6131_08980) | ffh | 1726495..1727835 (+) | 1341 | WP_014113771.1 | signal recognition particle protein | - |
| KJP56_RS09010 (NRS6131_08985) | rpsP | 1727941..1728213 (+) | 273 | WP_003220815.1 | 30S ribosomal protein S16 | - |
| KJP56_RS09015 (NRS6131_08990) | ylqC | 1728213..1728458 (+) | 246 | WP_014476792.1 | KH domain-containing protein | - |
| KJP56_RS09020 (NRS6131_08995) | ylqD | 1728580..1728966 (+) | 387 | WP_014476793.1 | YlqD family protein | - |
| KJP56_RS09025 (NRS6131_09000) | rimM | 1728971..1729495 (+) | 525 | WP_003232013.1 | ribosome maturation factor RimM | - |
| KJP56_RS09030 (NRS6131_09005) | trmD | 1729492..1730223 (+) | 732 | WP_003232011.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| KJP56_RS09035 (NRS6131_09010) | rplS | 1730363..1730710 (+) | 348 | WP_003220825.1 | 50S ribosomal protein L19 | - |
| KJP56_RS09040 (NRS6131_09015) | ylqF | 1730853..1731701 (+) | 849 | WP_003232007.1 | ribosome biogenesis GTPase YlqF | - |
| KJP56_RS09045 (NRS6131_09020) | rnhB | 1731772..1732539 (+) | 768 | WP_021479299.1 | ribonuclease HII | - |
| KJP56_RS09050 (NRS6131_09025) | - | 1732571..1734301 (+) | 1731 | WP_161985993.1 | hypothetical protein | - |
| KJP56_RS09055 (NRS6131_09030) | ylqH | 1734298..1734579 (+) | 282 | WP_003232001.1 | FlhB-like flagellar biosynthesis protein | - |
| KJP56_RS09060 (NRS6131_09035) | sucC | 1734752..1735909 (+) | 1158 | WP_003244732.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| KJP56_RS09065 (NRS6131_09040) | sucD | 1735938..1736840 (+) | 903 | WP_024572248.1 | succinate--CoA ligase subunit alpha | - |
| KJP56_RS09070 (NRS6131_09045) | dprA | 1736901..1737794 (+) | 894 | WP_015715882.1 | DNA-processing protein DprA | Machinery gene |
| KJP56_RS09075 (NRS6131_09050) | topA | 1737982..1740057 (+) | 2076 | WP_213419593.1 | type I DNA topoisomerase | - |
| KJP56_RS09080 (NRS6131_09055) | trmFO | 1740133..1741440 (+) | 1308 | WP_015715883.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| KJP56_RS09085 (NRS6131_09060) | xerC | 1741508..1742422 (+) | 915 | WP_161985994.1 | tyrosine recombinase XerC | - |
| KJP56_RS09090 (NRS6131_09065) | clpQ | 1742435..1742980 (+) | 546 | WP_003238555.1 | ATP-dependent protease subunit ClpQ | - |
| KJP56_RS09095 (NRS6131_09070) | hslU | 1742988..1744400 (+) | 1413 | WP_255220399.1 | HslU--HslV peptidase ATPase subunit | - |
| KJP56_RS09100 (NRS6131_09075) | codY | 1744440..1745219 (+) | 780 | WP_003220850.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| KJP56_RS09105 (NRS6131_09080) | flgB | 1745599..1745988 (+) | 390 | WP_003245656.1 | flagellar basal body rod protein FlgB | - |
| KJP56_RS09110 (NRS6131_09085) | flgC | 1745988..1746440 (+) | 453 | WP_021479294.1 | flagellar basal body rod protein FlgC | - |
| KJP56_RS09115 (NRS6131_09090) | fliE | 1746451..1746771 (+) | 321 | WP_003238544.1 | flagellar hook-basal body complex protein FliE | - |
| KJP56_RS09120 (NRS6131_09095) | fliF | 1746817..1748427 (+) | 1611 | WP_213419594.1 | flagellar basal-body MS-ring/collar protein FliF | - |
| KJP56_RS09125 (NRS6131_09100) | fliG | 1748440..1749456 (+) | 1017 | WP_003231981.1 | flagellar motor switch protein FliG | - |
| KJP56_RS09130 (NRS6131_09105) | fliH | 1749449..1750201 (+) | 753 | WP_003244804.1 | flagellar assembly protein FliH | - |
| KJP56_RS09135 (NRS6131_09110) | fliI | 1750198..1751514 (+) | 1317 | WP_032725698.1 | flagellar protein export ATPase FliI | - |
| KJP56_RS09140 (NRS6131_09115) | fliJ | 1751517..1751960 (+) | 444 | WP_003231977.1 | flagellar export protein FliJ | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 29013.22 Da Isoelectric Point: 4.6514
>NTDB_id=1158063 KJP56_RS09100 WP_003220850.1 1744440..1745219(+) (codY) [Bacillus subtilis isolate NRS6131]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
Nucleotide
Download Length: 780 bp
>NTDB_id=1158063 KJP56_RS09100 WP_003220850.1 1744440..1745219(+) (codY) [Bacillus subtilis isolate NRS6131]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.451 |
98.456 |
0.467 |