Detailed information NTG1157982

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: KJP60_RS09205
• Genome accession: NZ_OX419580
• Coordinates: 1738650..1739429 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis isolate NRS6116
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1733650..1744429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJP60_RS09185 (NRS6116_09245)	trmFO	1734343..1735650 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
KJP60_RS09190 (NRS6116_09250)	xerC	1735718..1736632 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
KJP60_RS09195 (NRS6116_09255)	clpQ	1736645..1737190 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
KJP60_RS09200 (NRS6116_09260)	hslU	1737198..1738610 (+)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
KJP60_RS09205 (NRS6116_09265)	codY	1738650..1739429 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
KJP60_RS09210 (NRS6116_09270)	flgB	1739809..1740198 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
KJP60_RS09215 (NRS6116_09275)	flgC	1740198..1740650 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
KJP60_RS09220 (NRS6116_09280)	fliE	1740661..1740981 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
KJP60_RS09225 (NRS6116_09285)	fliF	1741027..1742637 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
KJP60_RS09230 (NRS6116_09290)	fliG	1742650..1743666 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
KJP60_RS09235 (NRS6116_09295)	fliH	1743659..1744411 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1157982 KJP60_RS09205 WP_003220850.1 1738650..1739429(+) (codY) [Bacillus subtilis isolate NRS6116]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1157982 KJP60_RS09205 WP_003220850.1 1738650..1739429(+) (codY) [Bacillus subtilis isolate NRS6116]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467