Detailed information NTG1157898

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: KJP43_RS08660
• Genome accession: NZ_OX419579
• Coordinates: 1658407..1659186 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis isolate NRS6103
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1653407..1664186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJP43_RS08640 (NRS6103_08560)	trmFO	1654100..1655407 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
KJP43_RS08645 (NRS6103_08565)	xerC	1655475..1656389 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
KJP43_RS08650 (NRS6103_08570)	clpQ	1656402..1656947 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
KJP43_RS08655 (NRS6103_08575)	hslU	1656955..1658367 (+)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
KJP43_RS08660 (NRS6103_08580)	codY	1658407..1659186 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
KJP43_RS08665 (NRS6103_08585)	flgB	1659566..1659955 (+)	390	WP_029726489.1	flagellar basal body rod protein FlgB	-
KJP43_RS08670 (NRS6103_08590)	flgC	1659955..1660407 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
KJP43_RS08675 (NRS6103_08595)	fliE	1660418..1660738 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
KJP43_RS08680 (NRS6103_08600)	fliF	1660784..1662394 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
KJP43_RS08685 (NRS6103_08605)	fliG	1662407..1663423 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
KJP43_RS08690 (NRS6103_08610)	fliH	1663416..1664168 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1157898 KJP43_RS08660 WP_003220850.1 1658407..1659186(+) (codY) [Bacillus subtilis isolate NRS6103]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1157898 KJP43_RS08660 WP_003220850.1 1658407..1659186(+) (codY) [Bacillus subtilis isolate NRS6103]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTAGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467