Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RG33_RS14720 Genome accession   NZ_CP010133
Coordinates   2887594..2888061 (-) Length   155 a.a.
NCBI ID   WP_040090373.1    Uniprot ID   -
Organism   Escherichia coli strain C11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2882594..2893061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG33_RS14690 (RG33_13740) rpsG 2882736..2883206 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RG33_RS14695 (RG33_13745) fusA 2883303..2885417 (+) 2115 WP_000124700.1 elongation factor G -
  RG33_RS14700 (RG33_13750) tuf 2885488..2886654 (+) 1167 Protein_2630 elongation factor Tu -
  RG33_RS14710 (RG33_13755) bfd 2886854..2887048 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RG33_RS14715 (RG33_13760) bfr 2887121..2887597 (+) 477 WP_000675515.1 bacterioferritin -
  RG33_RS14720 (RG33_13765) pilD 2887594..2888061 (-) 468 WP_040090373.1 A24 family peptidase Machinery gene
  RG33_RS14730 (RG33_13775) rpsJ 2888440..2888751 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RG33_RS14735 (RG33_13780) rplC 2888784..2889413 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RG33_RS14740 (RG33_13785) rplD 2889424..2890029 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RG33_RS14745 (RG33_13790) rplW 2890026..2890328 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RG33_RS14750 (RG33_13795) rplB 2890346..2891167 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RG33_RS14755 (RG33_13800) rpsS 2891184..2891462 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RG33_RS14760 (RG33_13805) rplV 2891477..2891809 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RG33_RS14765 (RG33_13810) rpsC 2891827..2892528 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RG33_RS14770 (RG33_13815) rplP 2892541..2892951 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16922.08 Da        Isoelectric Point: 8.1338

>NTDB_id=115774 RG33_RS14720 WP_040090373.1 2887594..2888061(-) (pilD) [Escherichia coli strain C11]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGFRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=115774 RG33_RS14720 WP_040090373.1 2887594..2888061(-) (pilD) [Escherichia coli strain C11]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTTTCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

45.6

80.645

0.368

Multiple sequence alignment