Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SMUFR_RS04265 Genome accession   NZ_CP007016
Coordinates   874911..876713 (+) Length   600 a.a.
NCBI ID   WP_002263293.1    Uniprot ID   Q8DUK5
Organism   Streptococcus mutans UA159-FR     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 855639..878457 874911..876713 within 0


Gene organization within MGE regions


Location: 855639..878457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUFR_RS04190 (SMUFR_0787) - 855639..856844 (+) 1206 WP_002262894.1 CCA tRNA nucleotidyltransferase -
  SMUFR_RS04195 (SMUFR_0788) - 856847..858715 (+) 1869 WP_002262895.1 ABC-F family ATP-binding cassette domain-containing protein -
  SMUFR_RS04205 (SMUFR_0789) - 859172..860908 (+) 1737 WP_002262897.1 ABC transporter ATP-binding protein -
  SMUFR_RS04210 (SMUFR_0790) - 860919..862691 (+) 1773 WP_002262898.1 ABC transporter ATP-binding protein -
  SMUFR_RS04215 (SMUFR_0791) - 862807..863727 (+) 921 WP_002262899.1 AEC family transporter -
  SMUFR_RS04220 (SMUFR_0792) gtfD 863947..868335 (+) 4389 WP_002352262.1 glucosyltransferase-S -
  SMUFR_RS04225 (SMUFR_0793) - 868510..869019 (-) 510 WP_002262901.1 DUF308 domain-containing protein -
  SMUFR_RS04230 (SMUFR_0794) gdhA 869655..871004 (+) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  SMUFR_RS04235 (SMUFR_0795) - 871116..871499 (-) 384 WP_002263287.1 DUF3021 family protein -
  SMUFR_RS10680 (SMUFR_0796) queF 871608..872096 (-) 489 WP_002263288.1 preQ(1) synthase -
  SMUFR_RS10685 (SMUFR_0797) queE 872109..872825 (-) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  SMUFR_RS04250 (SMUFR_0798) queD 872822..873268 (-) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  SMUFR_RS04255 (SMUFR_0799) queC 873268..873921 (-) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  SMUFR_RS04260 (SMUFR_0800) rcrR 874473..874907 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SMUFR_RS04265 (SMUFR_0801) rcrP 874911..876713 (+) 1803 WP_002263293.1 ABC transporter ATP-binding protein Regulator
  SMUFR_RS04270 (SMUFR_0802) rcrQ 876703..878457 (+) 1755 WP_002263294.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66968.76 Da        Isoelectric Point: 9.6602

>NTDB_id=115763 SMUFR_RS04265 WP_002263293.1 874911..876713(+) (rcrP) [Streptococcus mutans UA159-FR]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKNLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQDYSHDDLNNKVGYIPQRAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=115763 SMUFR_RS04265 WP_002263293.1 874911..876713(+) (rcrP) [Streptococcus mutans UA159-FR]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAACCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGAATCAAAGTGCAAGATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAGGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTAGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTG
GTCTTAGATCAGGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

100

100

1

Multiple sequence alignment