Detailed information NTG1157158

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: KJP64_RS08680
• Genome accession: NZ_OX419565
• Coordinates: 1661512..1662291 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis isolate NRS6145
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1656512..1667291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJP64_RS08660 (NRS6145_08575)	trmFO	1657205..1658512 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
KJP64_RS08665 (NRS6145_08580)	xerC	1658580..1659494 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
KJP64_RS08670 (NRS6145_08585)	clpQ	1659507..1660052 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
KJP64_RS08675 (NRS6145_08590)	hslU	1660060..1661472 (+)	1413	WP_255220399.1	HslU--HslV peptidase ATPase subunit	-
KJP64_RS08680 (NRS6145_08595)	codY	1661512..1662291 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
KJP64_RS08685 (NRS6145_08600)	flgB	1662671..1663060 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
KJP64_RS08690 (NRS6145_08605)	flgC	1663060..1663512 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
KJP64_RS08695 (NRS6145_08610)	fliE	1663523..1663843 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
KJP64_RS08700 (NRS6145_08615)	fliF	1663889..1665499 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
KJP64_RS08705 (NRS6145_08620)	fliG	1665512..1666528 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
KJP64_RS08710 (NRS6145_08625)	fliH	1666521..1667273 (+)	753	WP_213379379.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1157158 KJP64_RS08680 WP_003220850.1 1661512..1662291(+) (codY) [Bacillus subtilis isolate NRS6145]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1157158 KJP64_RS08680 WP_003220850.1 1661512..1662291(+) (codY) [Bacillus subtilis isolate NRS6145]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467