Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   KJP53_RS12525 Genome accession   NZ_OX419551
Coordinates   2445501..2445884 (-) Length   127 a.a.
NCBI ID   WP_003230168.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6190     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2440501..2450884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP53_RS12485 (NRS6190_12425) sinI 2441435..2441608 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP53_RS12490 (NRS6190_12430) sinR 2441642..2441977 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP53_RS12495 (NRS6190_12435) tasA 2442070..2442855 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  KJP53_RS12500 (NRS6190_12440) sipW 2442919..2443491 (-) 573 WP_003230181.1 signal peptidase I -
  KJP53_RS12505 (NRS6190_12445) tapA 2443475..2444236 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  KJP53_RS12510 (NRS6190_12450) yqzG 2444508..2444834 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP53_RS12515 (NRS6190_12455) spoIIT 2444876..2445055 (-) 180 WP_003230176.1 YqzE family protein -
  KJP53_RS12520 (NRS6190_12460) comGG 2445126..2445500 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  KJP53_RS12525 (NRS6190_12465) comGF 2445501..2445884 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  KJP53_RS12530 (NRS6190_12470) comGE 2445910..2446257 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  KJP53_RS12535 (NRS6190_12475) comGD 2446241..2446672 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  KJP53_RS12540 (NRS6190_12480) comGC 2446662..2446958 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KJP53_RS12545 (NRS6190_12485) comGB 2446972..2448009 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  KJP53_RS12550 (NRS6190_12490) comGA 2447996..2449066 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KJP53_RS12555 (NRS6190_12500) corA 2449478..2450431 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14281.37 Da        Isoelectric Point: 5.8929

>NTDB_id=1156440 KJP53_RS12525 WP_003230168.1 2445501..2445884(-) (comGF) [Bacillus subtilis isolate NRS6190]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHITAMKADIENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1156440 KJP53_RS12525 WP_003230168.1 2445501..2445884(-) (comGF) [Bacillus subtilis isolate NRS6190]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
GGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAATCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAAGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment