Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QMX76_RS16895 Genome accession   NZ_OX411212
Coordinates   3508343..3509068 (+) Length   241 a.a.
NCBI ID   WP_282249968.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3503343..3514068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS16880 - 3504468..3506789 (+) 2322 WP_282249967.1 Tex family protein -
  QMX76_RS16885 - 3506894..3507358 (-) 465 WP_005430182.1 hypothetical protein -
  QMX76_RS16890 bioH 3507494..3508258 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  QMX76_RS16895 comF 3508343..3509068 (+) 726 WP_282249968.1 ComF family protein Machinery gene
  QMX76_RS16900 nfuA 3509166..3509750 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  QMX76_RS16905 nudE 3509926..3510492 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  QMX76_RS16910 cysQ 3510540..3511367 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QMX76_RS16915 - 3511658..3512419 (-) 762 WP_282249969.1 type II secretion system protein N -
  QMX76_RS16920 - 3512421..3512912 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27623.83 Da        Isoelectric Point: 8.4388

>NTDB_id=1156293 QMX76_RS16895 WP_282249968.1 3508343..3509068(+) (comF) [Vibrio campbellii isolate BF5_0283]
MLSHQWQNIMHRVLGSQCGLCRFPMPHRQTPNLMRWCDSCFDHLTPIERCMRCGLKMTEKESQAATECGECLKKPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQSFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1156293 QMX76_RS16895 WP_282249968.1 3508343..3509068(+) (comF) [Vibrio campbellii isolate BF5_0283]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTTGGCAGCCAATGTGGTTTGTGTCGATTTCCCATGCCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATTGAGCGCTGTATGCGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAAAACCACCACCATGGCGGCGT
TTGTATACCTTGGGTGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACGAGTGTGCCCGTTCACTGGCAGA
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

96.68

100

0.967
  comF Vibrio cholerae strain A1552

46.218

98.755

0.456

Multiple sequence alignment