Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QNH68_RS05490 Genome accession   NZ_OX352944
Coordinates   1131411..1132250 (-) Length   279 a.a.
NCBI ID   WP_024417501.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_LM_H     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1126411..1137250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH68_RS05475 uidA 1126749..1128548 (-) 1800 WP_024417499.1 beta-glucuronidase -
  QNH68_RS05480 - 1128564..1129592 (-) 1029 WP_013730404.1 sugar kinase -
  QNH68_RS05485 - 1129648..1131224 (-) 1577 Protein_1067 MFS transporter -
  QNH68_RS05490 endA 1131411..1132250 (-) 840 WP_024417501.1 DNA/RNA non-specific endonuclease Machinery gene
  QNH68_RS05495 - 1132280..1132471 (-) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  QNH68_RS05500 murA 1132464..1133747 (-) 1284 WP_024417502.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QNH68_RS05505 - 1133772..1133996 (-) 225 WP_024387485.1 DUF1146 family protein -
  QNH68_RS05510 - 1134056..1134472 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  QNH68_RS05515 atpD 1134482..1135888 (-) 1407 WP_024417504.1 F0F1 ATP synthase subunit beta -
  QNH68_RS05520 - 1135908..1136786 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30187.41 Da        Isoelectric Point: 6.2370

>NTDB_id=1155572 QNH68_RS05490 WP_024417501.1 1131411..1132250(-) (endA) [Streptococcus suis isolate 861160_LM_H]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGIPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1155572 QNH68_RS05490 WP_024417501.1 1131411..1132250(-) (endA) [Streptococcus suis isolate 861160_LM_H]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCATAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591

Multiple sequence alignment