Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QNH78_RS06050 Genome accession   NZ_OX352831
Coordinates   1217938..1218777 (-) Length   279 a.a.
NCBI ID   WP_024417501.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_dxerD_hsdSE     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1212938..1223777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH78_RS06035 uidA 1213276..1215075 (-) 1800 WP_024417499.1 beta-glucuronidase -
  QNH78_RS06040 - 1215091..1216119 (-) 1029 WP_013730404.1 sugar kinase -
  QNH78_RS06045 - 1216175..1217751 (-) 1577 Protein_1158 MFS transporter -
  QNH78_RS06050 endA 1217938..1218777 (-) 840 WP_024417501.1 DNA/RNA non-specific endonuclease Machinery gene
  QNH78_RS06055 - 1218807..1218998 (-) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  QNH78_RS06060 murA 1218991..1220274 (-) 1284 WP_024417502.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QNH78_RS06065 - 1220299..1220523 (-) 225 WP_024387485.1 DUF1146 family protein -
  QNH78_RS06070 - 1220583..1220999 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  QNH78_RS06075 atpD 1221009..1222415 (-) 1407 WP_024417504.1 F0F1 ATP synthase subunit beta -
  QNH78_RS06080 - 1222435..1223313 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30187.41 Da        Isoelectric Point: 6.2370

>NTDB_id=1155415 QNH78_RS06050 WP_024417501.1 1217938..1218777(-) (endA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGIPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1155415 QNH78_RS06050 WP_024417501.1 1217938..1218777(-) (endA) [Streptococcus suis isolate 861160_dxerD_hsdSE]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCATAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591

Multiple sequence alignment